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rifcsphigho2_02_scaffold_13669

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_13669_1

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comp(3..920)
-----------------
DNA (918bp)
protein (306aa)
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5046315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator protein, replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO46116.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46116.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.
DNA replication initiator Cdc21/Cdc54
rifcsphigho2_02_scaffold_13669_2

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comp(1037..1618)
-----------------
DNA (582bp)
protein (194aa)
TATA-box-binding protein id=5800078 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box-binding protein
rifcsphigho2_02_scaffold_13669_3
unknown

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2031..3230
-----------------
DNA (1200bp)
protein (400aa)

This feature has no annotations

rifcsphigho2_02_scaffold_13669_4
unknown

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comp(3233..3655)
-----------------
DNA (423bp)
protein (141aa)

This feature has no annotations

rifcsphigho2_02_scaffold_13669_5

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comp(3688..4452)
-----------------
DNA (765bp)
protein (255aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51237.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_13669_6

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comp(4465..5106)
-----------------
DNA (642bp)
protein (214aa)
Protein translocase subunit SecY {ECO:0000256|RuleBase:RU000537}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsphigho2_02_scaffold_13669_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(5215..5787)
-----------------
DNA (573bp)
protein (191aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=CG_Woesearch_02
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsphigho2_02_scaffold_13669_8

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comp(5915..6370)
-----------------
DNA (456bp)
protein (152aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl15p; 50S ribosomal protein L15
rifcsphigho2_02_scaffold_13669_9
AR15, Woesearchaeaota, DPANN, Archaea

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comp(6371..6820)
-----------------
DNA (450bp)
protein (150aa)
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30P Tax=AR15
50S ribosomal protein L30P
rifcsphigho2_02_scaffold_13669_10

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comp(6825..7625)
-----------------
DNA (801bp)
protein (267aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5041779 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5P, small subunit ribosomal protein S5 {ECO:0000313|EMBL:KHO47207.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
30S ribosomal protein S5
rifcsphigho2_02_scaffold_13669_11
Methanococcus voltae, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(7627..8184)
-----------------
DNA (558bp)
protein (186aa)
50S ribosomal protein L18P n=1 Tax=Methanococcus voltae (strain ATCC BAA-1334 / A3) RepID=D7DU91_METV3
50S ribosomal protein L18P/L5E
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=456320 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus
rifcsphigho2_02_scaffold_13669_12
AR4, Woesearchaeaota, DPANN, Archaea

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comp(8181..8633)
-----------------
DNA (453bp)
protein (151aa)
ribosomal protein L19e; K02885 large subunit ribosomal protein L19e id=5041777 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ribosomal protein L19e; K02885 large subunit ribosomal protein L19e Tax=AR4
ribosomal protein L19e
rifcsphigho2_02_scaffold_13669_13

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comp(8636..9199)
-----------------
DNA (564bp)
protein (188aa)
50S ribosomal protein L32e n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RL32_METJA
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO51172.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rpl32e; 50S ribosomal protein L32e
rifcsphigho2_02_scaffold_13669_14

Not on your lists


comp(9201..9749)
-----------------
DNA (549bp)
protein (183aa)
50S ribosomal protein L6 n=5 Tax=Thermococcus RepID=RL6_PYRKO id=5103268 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Large subunit ribosomal protein L6 {ECO:0000313|EMBL:AJS12872.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
rifcsphigho2_02_scaffold_13669_15

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comp(9754..10143)
-----------------
DNA (390bp)
protein (130aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
rifcsphigho2_02_scaffold_13669_16

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comp(10152..10382)
-----------------
DNA (231bp)
protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46813.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
SSU ribosomal protein S14P
rifcsphigho2_02_scaffold_13669_17

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comp(10379..10894)
-----------------
DNA (516bp)
protein (172aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsphigho2_02_scaffold_13669_18
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(10891..11580)
-----------------
DNA (690bp)
protein (230aa)
SSU ribosomal protein s4e; K02987 small subunit ribosomal protein S4e Tax=RBG_13_Woesearchaeota_36_6_curated
rps4e; 30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e id=5041771 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S4e
rifcsphigho2_02_scaffold_13669_19

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comp(11582..11962)
-----------------
DNA (381bp)
protein (127aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=5042312 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L24P
rifcsphigho2_02_scaffold_13669_20

Not on your lists


comp(11964..12365)
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsphigho2_02_scaffold_13669_21

Not on your lists


comp(12352..12726)
-----------------
DNA (375bp)
protein (125aa)
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12457.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps17p; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=5041768 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rps17p; 30S ribosomal protein S17P
rifcsphigho2_02_scaffold_13669_22
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(12723..12977)
-----------------
DNA (255bp)
protein (85aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
Ribonuclease P protein component 1 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ASD9_9ARCH
rifcsphigho2_02_scaffold_13669_23
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(12974..13285)
-----------------
DNA (312bp)
protein (104aa)
translation initiation factor 1 (eif-1/sui1); K03113 translation initiation factor 1 Tax=RBG_13_Woesearchaeota_36_6_curated
Protein translation factor SUI1 homolog id=5800056 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
SUI1 family translation initiation factor
rifcsphigho2_02_scaffold_13669_24

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comp(13282..13491)
-----------------
DNA (210bp)
protein (70aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 id=5042307 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L29
rifcsphigho2_02_scaffold_13669_25

Not on your lists


comp(13488..14297)
-----------------
DNA (810bp)
protein (270aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQQ3_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
rifcsphigho2_02_scaffold_13669_26
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(14299..14781)
-----------------
DNA (483bp)
protein (161aa)
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=CG_Woesearch_02
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22
rifcsphigho2_02_scaffold_13669_27

Not on your lists


comp(14800..15183)
-----------------
DNA (384bp)
protein (128aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=5042304 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S15
Displaying 27 items

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