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rifcsphigho2_02_scaffold_27965

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_27965_1
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(40..720)
-----------------
DNA (681bp)
protein (227aa)
Putative hydrolase n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GUA8_SELRL
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAL84345.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lac
rifcsphigho2_02_scaffold_27965_2

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860..1792
-----------------
DNA (933bp)
protein (311aa)
phosphate uptake regulator id=5045865 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphate uptake regulator {ECO:0000313|EMBL:KHO46478.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_27965_3
unknown

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comp(1742..3769)
-----------------
DNA (2028bp)
protein (676aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27965_4
unknown

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comp(3888..4274)
-----------------
DNA (387bp)
protein (129aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27965_5
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(4271..4573)
-----------------
DNA (303bp)
protein (101aa)
hypothetical protein
id=5103865 Tax=RBG_13_Woesearchaeota_36_6_curated
id=5045863 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_27965_6
R_OP11_Gottesmanbacteria_46_9, Gottesmanbacteria, Microgenomates, Bacteria

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comp(5301..5756)
-----------------
DNA (456bp)
protein (152aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_46_9_curated
rifcsphigho2_02_scaffold_27965_7
RIFOXYB2_FULL_Elusimicrobia_48_7_curated, Elusimicrobia, Bacteria

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comp(5753..6202)
-----------------
DNA (450bp)
protein (150aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=RIFOXYB2_FULL_Elusimicrobia_48_7_curated
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) id=2588580 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
rifcsphigho2_02_scaffold_27965_8
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

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comp(6233..6424)
-----------------
DNA (192bp)
protein (64aa)
multi-sensor hybrid histidine kinase Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) id=2588580 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
rifcsphigho2_02_scaffold_27965_9
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(6704..7201)
-----------------
DNA (498bp)
protein (166aa)
Putative uncharacterized protein n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AAD0_9EURY
putative nucleic acid-binding protein, contains PIN domain Tax=RBG_16_Micrarchaeota_49_10_curated
nucleic acid-binding protein
rifcsphigho2_02_scaffold_27965_10
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(7194..7406)
-----------------
DNA (213bp)
protein (71aa)
hypothetical protein Tax=RBG_16_Micrarchaeota_49_10_curated
hypothetical protein id=18311514 bin=Haloredivivus tax=Haloredivivus
rifcsphigho2_02_scaffold_27965_11
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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7528..9225
-----------------
DNA (1698bp)
protein (566aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00016154}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00088701};; Glutamyl-tRNA synthetase {ECO:00
Glutamate--tRNA ligase n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BEG2_METIK
glutamyl-tRNA synthetase
rifcsphigho2_02_scaffold_27965_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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9295..9456
-----------------
DNA (162bp)
protein (54aa)
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsphigho2_02_scaffold_27965_13
R_SM2F11_52_17, SM2F11, Bacteria

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comp(9521..10234)
-----------------
DNA (714bp)
protein (238aa)
cytochrome c biogenesis transmembrane protein Tax=RIFCSPHIGHO2_01_SM2F11_52_17_curated
cytochrome c biogenesis transmembrane protein id=5044143 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
cytochrome c biogenesis transmembrane protein
rifcsphigho2_02_scaffold_27965_14

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comp(10234..11067)
-----------------
DNA (834bp)
protein (278aa)
Uncharacterized protein n=1 Tax=Polysphondylium pallidum RepID=D3BNW2_POLPA
Uncharacterized protein {ECO:0000313|EMBL:KHO51062.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein
rifcsphigho2_02_scaffold_27965_15
unknown

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comp(11364..11987)
-----------------
DNA (624bp)
protein (208aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27965_16
AR4, Woesearchaeaota, DPANN, Archaea

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comp(11991..12497)
-----------------
DNA (507bp)
protein (169aa)
uncharacterized LOC100255898 id=5046623 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
uncharacterized LOC100255898 Tax=AR4
rifcsphigho2_02_scaffold_27965_17
GWC2_OD1_48_17, Parcubacteria, Bacteria

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12782..13000
-----------------
DNA (219bp)
protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU97177.1}; TaxID=1618933 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_48_17.;"
Uncharacterized protein id=3926394 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
rifcsphigho2_02_scaffold_27965_18

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comp(13120..14742)
-----------------
DNA (1623bp)
protein (541aa)
Thermosome subunit beta {ECO:0000313|EMBL:KHO50917.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Thermosome, chaperonin Cpn60/TCP-1 id=5800689 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Thermosome, chaperonin Cpn60/TCP-1
rifcsphigho2_02_scaffold_27965_19
unknown

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14898..15212
-----------------
DNA (315bp)
protein (105aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27965_20
GWA2_OD1_52_8b, Uhrbacteria, Parcubacteria, Bacteria

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15260..15799
-----------------
DNA (540bp)
protein (180aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1YP29_9BACT
Cytidylate kinase Tax=GWA2_OD1_52_8b
cytidylate kinase, putative
rifcsphigho2_02_scaffold_27965_21

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comp(15803..16297)
-----------------
DNA (495bp)
protein (165aa)
Nucleic acid binding protein n=1 Tax=uncultured organism RepID=M1Q266_9ZZZZ
Nucleic acid binding protein {ECO:0000313|EMBL:AGF93347.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
rifcsphigho2_02_scaffold_27965_22

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comp(16294..16626)
-----------------
DNA (333bp)
protein (111aa)
Protein belonging to Uncharacterized protein family UPF0175 n=1 Tax=uncultured organism RepID=M1P1S6_9ZZZZ
Protein belonging to Uncharacterized protein family UPF0175 {ECO:0000313|EMBL:AGF93346.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
rifcsphigho2_02_scaffold_27965_23
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(16677..17000)
-----------------
DNA (324bp)
protein (108aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035FEC2B
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsphigho2_02_scaffold_27965_24
unknown

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17142..17387
-----------------
DNA (246bp)
protein (82aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27965_25
unknown

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17453..17713
-----------------
DNA (261bp)
protein (87aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27965_26
unknown

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17799..18128
-----------------
DNA (330bp)
protein (110aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27965_27

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18295..18942
-----------------
DNA (648bp)
protein (216aa)
peptidyl-prolyl cis-trans isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] id=5043665 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Peptidyl-prolyl cis-trans isomerase
rifcsphigho2_02_scaffold_27965_28

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18978..20108
-----------------
DNA (1131bp)
protein (377aa)
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
cell division protein FtsZ; K03531 cell division protein FtsZ id=5043664 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Cell division protein FtsZ
rifcsphigho2_02_scaffold_27965_29

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20117..20371
-----------------
DNA (255bp)
protein (85aa)
secE; preprotein translocase subunit SecE; K07342 protein transport protein SEC61 subunit gamma and related proteins id=5043663 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; Protein transport protein Sec61 gamma subunit homolog {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1579365 species="Archaea.;" source="a
secE; preprotein translocase subunit SecE
rifcsphigho2_02_scaffold_27965_30

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20377..20862
-----------------
DNA (486bp)
protein (162aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG id=5043662 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Transcription elongation factor Spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
LSU ribosomal protein L24A Rpl24A
Displaying items 1-30 of 35 in total

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