ggKbase home page

rifcsphigho2_02_scaffold_11070

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_11070_1
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2..4390)
-----------------
DNA (4389bp)
protein (1463aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HED4_ANADF
hypothetical protein
Tax=AR11
rifcsphigho2_02_scaffold_11070_2
unknown

Not on your lists

comp(4582..5937)
-----------------
DNA (1356bp)
protein (452aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11070_3
unknown

Not on your lists

comp(6007..8769)
-----------------
DNA (2763bp)
protein (921aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11070_4
unknown

Not on your lists

8883..9233
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11070_5
unknown

Not on your lists

9437..9778
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11070_6

Not on your lists

comp(9881..10477)
-----------------
DNA (597bp)
protein (199aa)
Ribonuclease P/MRP protein subunit RPP1 {ECO:0000313|EMBL:KHO50749.1}; EC=3.1.26.5 {ECO:0000313|EMBL:KHO50749.1};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rnpA; ribonuclease P protein component 3 (EC:3.1.26.5); K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] id=5046310 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_11070_7

Not on your lists

comp(10474..11421)
-----------------
DNA (948bp)
protein (316aa)
Marine sediment metagenome DNA, contig: S01H1_S12770 {ECO:0000313|EMBL:GAF99732.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
PP-loop domain containing protein id=5046311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_11070_8
unknown

Not on your lists

comp(11504..12124)
-----------------
DNA (621bp)
protein (207aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11070_9
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

12234..13679
-----------------
DNA (1446bp)
protein (482aa)
Uncharacterized protein n=1 Tax=Haloferax elongans ATCC BAA-1513 RepID=M0HJD0_9EURY
Putative uncharacterized protein Tax=GWA2_OD1_31_28_partial
hypothetical protein
rifcsphigho2_02_scaffold_11070_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

13872..14081
-----------------
DNA (210bp)
protein (70aa)
id=5046914 Tax=RBG_16_Euryarchaeota_41_19_curated
id=5046914 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_11070_11

Not on your lists

14050..14280
-----------------
DNA (231bp)
protein (77aa)
id=5046914 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45860.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_11070_12
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(14283..15401)
-----------------
DNA (1119bp)
protein (373aa)
class V aminotransferase (NifS-like); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RBG_13_Pacearchaeota_33_26_curated
cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=5 Tax=Thermoanaerobacter RepID=B0K583_THEPX
rifcsphigho2_02_scaffold_11070_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15435..16202)
-----------------
DNA (768bp)
protein (256aa)
OsmC-like protein n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M050_GRAFK
hydrolase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
OsmC-like protein
rifcsphigho2_02_scaffold_11070_14

Not on your lists


16923..17255
-----------------
DNA (333bp)
protein (111aa)
Large subunit ribosomal protein L14e {ECO:0000313|EMBL:KHO51240.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L14; K02875 large subunit ribosomal protein L14e id=5042328 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14e
rifcsphigho2_02_scaffold_11070_15
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17252..18082
-----------------
DNA (831bp)
protein (277aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XXK2_PSEMY
Uncharacterized protein {ECO:0000313|EMBL:ABP86068.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendoc
hypothetical protein
rifcsphigho2_02_scaffold_11070_16

Not on your lists


comp(18088..19743)
-----------------
DNA (1656bp)
protein (552aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00284};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284};
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000374A334
Phenylalanine-tRNA ligase beta subunit
rifcsphigho2_02_scaffold_11070_17
unknown

Not on your lists

comp(19745..20107)
-----------------
DNA (363bp)
protein (121aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11070_18
unknown

Not on your lists

comp(20104..20865)
-----------------
DNA (762bp)
protein (254aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11070_19
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(20909..22510)
-----------------
DNA (1602bp)
protein (534aa)
Phenylalanine--tRNA ligase alpha subunit id=5800822 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Phenylalanine--tRNA ligase alpha subunit Tax=AR15
Phenylalanine-tRNA ligase alpha subunit
rifcsphigho2_02_scaffold_11070_20
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

22559..22837
-----------------
DNA (279bp)
protein (93aa)
id=5046782 Tax=CG_Woesearch_02
rifcsphigho2_02_scaffold_11070_21

Not on your lists

22845..23147
-----------------
DNA (303bp)
protein (101aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50773.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rifcsphigho2_02_scaffold_11070_22
unknown

Not on your lists

23312..24199
-----------------
DNA (888bp)
protein (296aa)

This feature has no annotations

Displaying 22 items

View Taxonomy