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rifcsphigho2_02_scaffold_6004

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_6004_1

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1..231
-----------------
DNA (231bp)
protein (77aa)
50S ribosomal protein L18P n=1 Tax=Thermofilum sp. 1910b RepID=S5ZBG9_9CREN
LSU ribosomal protein L5e (L18p)
rifcsphigho2_02_scaffold_6004_2
AR4, Woesearchaeaota, DPANN, Archaea

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234..1076
-----------------
DNA (843bp)
protein (281aa)
BSCG--ribosomal--protein--S5
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5041779 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5
rifcsphigho2_02_scaffold_6004_3

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1066..1467
-----------------
DNA (402bp)
protein (134aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003719CE9
50S ribosomal protein L30P
rifcsphigho2_02_scaffold_6004_4

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1468..1920
-----------------
DNA (453bp)
protein (151aa)
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
rifcsphigho2_02_scaffold_6004_5
CG_Woesearch_02, Woesearchaeota, Archaea

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2189..3580
-----------------
DNA (1392bp)
protein (464aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5042324 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecY
rifcsphigho2_02_scaffold_6004_6
AR11, Woesearchaeaota, DPANN, Archaea

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3728..4495
-----------------
DNA (768bp)
protein (256aa)
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_6004_7
unknown

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comp(4639..4965)
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6004_8
AR15, Woesearchaeaota, DPANN, Archaea

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5327..5902
-----------------
DNA (576bp)
protein (192aa)
TATA-box-binding protein id=5800078 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
TATA-box-binding protein
rifcsphigho2_02_scaffold_6004_9

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6042..8054
-----------------
DNA (2013bp)
protein (671aa)
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5046315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator Cdc21/Cdc54
rifcsphigho2_02_scaffold_6004_10
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

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8089..9549
-----------------
DNA (1461bp)
protein (487aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FKP8_9BACT
phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_6004_11
Vibrio shilonii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9546..10814)
-----------------
DNA (1269bp)
protein (423aa)
Uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D0U4_9VIBR
hypothetical protein
rifcsphigho2_02_scaffold_6004_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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11181..11828
-----------------
DNA (648bp)
protein (216aa)
Nucleic acid-binding, OB-fold-like id=5800076 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_6004_13
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(12001..12852)
-----------------
DNA (852bp)
protein (284aa)
hypothetical protein
Uncharacterized membrane protein id=5041824 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_6004_14
CG_Woesearch_01, Woesearchaeota, Archaea

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12934..13341
-----------------
DNA (408bp)
protein (136aa)
translation initiation factor IF-2 subunit beta; K03238 translation initiation factor 2 subunit 2 id=5041823 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Translation initiation factor 2 subunit beta
rifcsphigho2_02_scaffold_6004_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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13343..13645
-----------------
DNA (303bp)
protein (101aa)
Uncharacterized protein id=5800099 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_6004_trna_1
unknown

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13775..13868
-----------------
DNA (94bp)
transferRNA
rifcsphigho2_02_scaffold_6004_16
RLO_RIF03_38_15, RIF3, Bacteria

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comp(13873..15282)
-----------------
DNA (1410bp)
protein (470aa)
Putative uncharacterized protein id=1830922 bin=GWA2_Planctomycete_KSU_39_15 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein
rifcsphigho2_02_scaffold_6004_17
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15334..16308
-----------------
DNA (975bp)
protein (325aa)
tRNA-dihydrouridine synthase n=1 Tax=Peptostreptococcus anaerobius 653-L RepID=D3MQ69_9FIRM
nifR3 family TIM-barrel protein
rifcsphigho2_02_scaffold_6004_18
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16332..16838)
-----------------
DNA (507bp)
protein (169aa)
talB; transaldolase B (EC:2.2.1.2)
UPI0003D1B2DF related cluster n=1 Tax=unknown RepID=UPI0003D1B2DF
Displaying 19 items

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