ggKbase home page

rifcsphigho2_02_scaffold_6888

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_6888_1
unknown

Not on your lists

2..376
-----------------
DNA (375bp)
protein (125aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6888_2
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

373..1779
-----------------
DNA (1407bp)
protein (469aa)
Peptidase M16 domain protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XF28_THEPJ
Peptidase M16 domain protein
rifcsphigho2_02_scaffold_6888_3
R_OD1_39_11, Parcubacteria, Bacteria

Not on your lists

comp(1793..3109)
-----------------
DNA (1317bp)
protein (439aa)
Protease 3 n=1 Tax=Bhargavaea cecembensis DSE10 RepID=M7P0R2_9BACL
ymxG; hypothetical protein
rifcsphigho2_02_scaffold_6888_trna_1
unknown

Not on your lists

comp(3148..3275)
-----------------
DNA (128bp)
transferRNA
rifcsphigho2_02_scaffold_6888_4
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(3917..5395)
-----------------
DNA (1479bp)
protein (493aa)
transmembrane_regions id=5043982 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_6888_5
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(5376..7430)
-----------------
DNA (2055bp)
protein (685aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036A0D51
SMC protein
rifcsphigho2_02_scaffold_6888_6
unknown

Not on your lists

comp(7566..7979)
-----------------
DNA (414bp)
protein (138aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6888_7
unknown

Not on your lists

8089..8316
-----------------
DNA (228bp)
protein (76aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6888_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8300..8686
-----------------
DNA (387bp)
protein (129aa)
PilT protein domain protein n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z2C9_9EURY
PIN domain-containing protein
rifcsphigho2_02_scaffold_6888_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

9010..9237
-----------------
DNA (228bp)
protein (76aa)
rifcsphigho2_02_scaffold_6888_10

Not on your lists

9234..9647
-----------------
DNA (414bp)
protein (138aa)
id=5048107 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein containing Nucleotide binding protein, PINc protein
rifcsphigho2_02_scaffold_6888_11
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

9754..10347
-----------------
DNA (594bp)
protein (198aa)
50S ribosomal protein L15e id=5799715 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L15e
rifcsphigho2_02_scaffold_6888_12
unknown

Not on your lists

comp(10407..11318)
-----------------
DNA (912bp)
protein (304aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6888_13
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

11466..12227
-----------------
DNA (762bp)
protein (254aa)
transcriptional regulator TrmB id=5044016 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
transcriptional regulator TrmB
rifcsphigho2_02_scaffold_6888_14

Not on your lists

comp(12224..12619)
-----------------
DNA (396bp)
protein (132aa)
id=4744551 bin=GWC2_OP3_44_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
rifcsphigho2_02_scaffold_6888_15

Not on your lists

12669..12944
-----------------
DNA (276bp)
protein (92aa)
CopG family transcripitonal regulator n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000364B2FD
rifcsphigho2_02_scaffold_6888_16

Not on your lists

comp(12936..13343)
-----------------
DNA (408bp)
protein (136aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037C2D4E
rifcsphigho2_02_scaffold_6888_17
unknown

Not on your lists

comp(13401..13802)
-----------------
DNA (402bp)
protein (134aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6888_18
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


13833..14327
-----------------
DNA (495bp)
protein (165aa)
ASCG--Ribosomal--protein--S19e
30S ribosomal protein S19; K02966 small subunit ribosomal protein S19e id=5049179 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ribosomal protein S19e
rifcsphigho2_02_scaffold_6888_19

Not on your lists

14320..14565
-----------------
DNA (246bp)
protein (82aa)
DNA-binding protein; K06875 programmed cell death protein 5 id=5049180 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_6888_20
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

14571..14744
-----------------
DNA (174bp)
protein (58aa)
hypothetical protein
id=5800694 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_6888_21

Not on your lists


14797..15267
-----------------
DNA (471bp)
protein (157aa)
RPL31A; 50S ribosomal protein L31; K02910 large subunit ribosomal protein L31e id=5049181 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ribosomal protein L31e
Displaying 22 items

View Taxonomy