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rifcsphigho2_02_scaffold_4244

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_4244_1
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(2..208)
-----------------
DNA (207bp)
protein (69aa)
beta-lactamase superfamily hydrolase Tax=CG_Woesearch_02
Metal-dependent hydrolase, beta-lactamase superfamily III id=5799925 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_4244_2
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

312..884
-----------------
DNA (573bp)
protein (191aa)
id=4838808 Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
id=4838808 bin=GWC2_OD1_43_27 species=ACD61 genus=ACD61 taxon_order=ACD61 taxon_class=ACD61 phylum=OP11 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
rifcsphigho2_02_scaffold_4244_3
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

973..1974
-----------------
DNA (1002bp)
protein (334aa)
tRNA 2-selenouridine synthase {ECO:0000256|SAAS:SAAS00035454}; EC=2.9.1.- {ECO:0000256|SAAS:SAAS00035457};; TaxID=177439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desu
Uncharacterized protein n=1 Tax=Desulfotalea psychrophila (strain LSv54 / DSM 12343) RepID=Q6AQE7_DESPS
tRNA 2-selenouridine synthase
rifcsphigho2_02_scaffold_4244_4
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2017..2697)
-----------------
DNA (681bp)
protein (227aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI00037F544D
hypothetical protein; K03975 membrane-associated protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
membrane-associated protein
rifcsphigho2_02_scaffold_4244_5
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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3157..4389
-----------------
DNA (1233bp)
protein (411aa)
major facilitator superfamily permease id=5091216 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Major facilitator superfamily permease {ECO:0000313|EMBL:KKP39959.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
major facilitator superfamily MFS_1
rifcsphigho2_02_scaffold_4244_6
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

4386..5177
-----------------
DNA (792bp)
protein (264aa)
OsmC-like protein; K06889; K07397 putative redox protein id=5048256 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
OsmC-like protein; K06889; K07397 putative redox protein Tax=AR18
alpha/beta superfamily hydrolase
rifcsphigho2_02_scaffold_4244_7

Not on your lists

comp(5174..5494)
-----------------
DNA (321bp)
protein (107aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003610899
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO46559.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_4244_8
unknown

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comp(5558..5878)
-----------------
DNA (321bp)
protein (107aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4244_9
Picrophilus torridus, Picrophilus, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(5875..6570)
-----------------
DNA (696bp)
protein (232aa)
TenA/THI-4 family protein n=1 Tax=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) RepID=Q6KZ95_PICTO
TenA/THI-4 family protein
TenA/THI-4 family protein {ECO:0000313|EMBL:AAT43957.1}; TaxID=263820 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Picrophilaceae; Picrophilus.;" source="Picrophilus torridus (s
rifcsphigho2_02_scaffold_4244_10
unknown

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comp(6616..7029)
-----------------
DNA (414bp)
protein (138aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4244_11
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

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7126..7578
-----------------
DNA (453bp)
protein (151aa)
Transcriptional regulator AsnC family n=1 Tax=Thermococcus sp. AM4 RepID=B7R3N1_9EURY
Transcriptional regulator AsnC family Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
Transcriptional regulator AsnC family
rifcsphigho2_02_scaffold_4244_12
unknown

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comp(7581..8084)
-----------------
DNA (504bp)
protein (168aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4244_13
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(8134..8685)
-----------------
DNA (552bp)
protein (184aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CG42_THET1
CDP-alcohol phosphatidyltransferase
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ACZ41898.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
rifcsphigho2_02_scaffold_4244_14
unknown

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8756..9502
-----------------
DNA (747bp)
protein (249aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4244_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(9499..12357)
-----------------
DNA (2859bp)
protein (953aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RBG_13_Woesearchaeota_36_6_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W5X2_UNCMA rbh
rifcsphigho2_02_scaffold_4244_16

Not on your lists

12455..13486
-----------------
DNA (1032bp)
protein (344aa)
endoglucanase (EC:3.2.1.4)
cellulase (EC:3.2.1.4); K01179 endoglucanase [EC:3.2.1.4] id=5241610 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Endoglucanase {ECO:0000313|EMBL:AJF60601.1}; EC=3.2.1.4 {ECO:0000313|EMBL:AJF60601.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_4244_17
unknown

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comp(13987..15111)
-----------------
DNA (1125bp)
protein (375aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4244_18

Not on your lists


comp(15377..15778)
-----------------
DNA (402bp)
protein (134aa)
SSU ribosomal protein S9P id=5799887 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S9 {ECO:0000256|RuleBase:RU003817}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
30S ribosomal protein S9
rifcsphigho2_02_scaffold_4244_19
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(15775..16200)
-----------------
DNA (426bp)
protein (142aa)
50S ribosomal protein L13 n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GEG3_METPE
50S ribosomal protein L13 Tax=CG_Woesearch_02
rpl13p; 50S ribosomal protein L13
rifcsphigho2_02_scaffold_4244_20
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(16202..16558)
-----------------
DNA (357bp)
protein (119aa)
50S ribosomal protein L18e n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD46_METIK
50S ribosomal protein L15; K02883 large subunit ribosomal protein L18e Tax=CG_Woesearch_02
50S ribosomal protein L18
rifcsphigho2_02_scaffold_4244_21
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(16563..17456)
-----------------
DNA (894bp)
protein (298aa)
id=5103465 Tax=CG_Pacearch_05
id=5048843 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_4244_trna_1
unknown

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comp(16569..16697)
-----------------
DNA (129bp)
transferRNA
rifcsphigho2_02_scaffold_4244_22
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(17474..18256)
-----------------
DNA (783bp)
protein (261aa)
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_13_Woesearchaeota_36_6_curated
DNA-directed RNA polymerase subunit D id=5799890 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit D
rifcsphigho2_02_scaffold_4244_23
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists


comp(18257..18661)
-----------------
DNA (405bp)
protein (135aa)
rps11p; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=CG_Woesearch_01
30S ribosomal protein S11 id=5799891 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps11p; 30S ribosomal protein S11P
rifcsphigho2_02_scaffold_4244_24
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(18664..19263)
-----------------
DNA (600bp)
protein (200aa)
30S ribosomal protein S4 n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LHM2_THEBM
rps4p; 30S ribosomal protein S4P; K02986 small subunit ribosomal protein S4 Tax=AR9
30S ribosomal protein S9e (S4p)
rifcsphigho2_02_scaffold_4244_25
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(19271..19669)
-----------------
DNA (399bp)
protein (133aa)
rps13p; 30S ribosomal protein S13p; K02952 small subunit ribosomal protein S13 Tax=CG_Woesearch_02
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S13
rifcsphigho2_02_scaffold_4244_26

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20341..20508
-----------------
DNA (168bp)
protein (56aa)
Marine sediment metagenome DNA, contig: S01H1_C00196 {ECO:0000313|EMBL:GAF73485.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_4244_27

Not on your lists

20505..21812
-----------------
DNA (1308bp)
protein (436aa)
Transposase n=1 Tax=uncultured archaeon GZfos26F9 RepID=Q64BW4_9ARCH
Marine sediment metagenome DNA, contig: S01H1_C00196 {ECO:0000313|EMBL:GAF73488.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
IS66 family element, transposase
Displaying 28 items

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