ggKbase home page

rifcsphigho2_02_scaffold_4251

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_4251_1
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(88..234)
-----------------
DNA (147bp)
protein (49aa)
coiled-coil Tax=AR10
rifcsphigho2_02_scaffold_4251_2

Not on your lists

413..661
-----------------
DNA (249bp)
protein (83aa)
transcriptional regulator PadR family transcriptional regulator id=5048283 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Transcriptional regulator PadR family transcriptional regulator {ECO:0000313|EMBL:KHO54001.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
transcriptional regulator PadR family transcriptional regulator
rifcsphigho2_02_scaffold_4251_3
R_OD1_40_30, Parcubacteria, Bacteria

Not on your lists

comp(672..1139)
-----------------
DNA (468bp)
protein (156aa)
bcp; peroxiredoxin bcp (EC:1.11.1.15); K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] Tax=RIFCSPHIGHO2_01_FULL_OD1_40_30_curated
bcp-1; bacterioferritin comigratory protein, thiol peroxidase, putative; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] id=31383 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
bcp; peroxiredoxin bcp (EC:1.11.1.15)
rifcsphigho2_02_scaffold_4251_4
unknown

Not on your lists

comp(1145..1342)
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4251_5

Not on your lists

comp(1616..7267)
-----------------
DNA (5652bp)
protein (1884aa)
Cell surface protein n=1 Tax=uncultured archaeon GZfos36D8 RepID=Q648U6_9ARCH
periplasmic copper-binding protein
Cell surface protein {ECO:0000313|EMBL:AAU84081.1}; TaxID=285373 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos36D8.;"
rifcsphigho2_02_scaffold_4251_6
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(7604..7855)
-----------------
DNA (252bp)
protein (84aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
N-acetyltransferase GCN5 id=5094959 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
rifcsphigho2_02_scaffold_4251_7
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7887..8336)
-----------------
DNA (450bp)
protein (150aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SKD0_9FLAO
Polyketide cyclase {ECO:0000313|EMBL:KIA86494.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.
hypothetical protein
rifcsphigho2_02_scaffold_4251_8
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

8421..8798
-----------------
DNA (378bp)
protein (126aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B356B5
Uncharacterized protein Tax=AR11
hypothetical protein
rifcsphigho2_02_scaffold_4251_9
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

8829..9536
-----------------
DNA (708bp)
protein (236aa)
hypothetical protein; K09125 hypothetical protein id=5096373 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
rifcsphigho2_02_scaffold_4251_10
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9629..9973)
-----------------
DNA (345bp)
protein (115aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] Tax=AR9
Peptidyl-tRNA hydrolase id=5799736 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
peptidyl-tRNA hydrolase
rifcsphigho2_02_scaffold_4251_11
unknown

Not on your lists

10638..11735
-----------------
DNA (1098bp)
protein (366aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4251_12
Thermococcus cleftensis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

11814..12632
-----------------
DNA (819bp)
protein (273aa)
Geranylgeranylglyceryl phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00112}; Short=GGGP synthase {ECO:0000256|HAMAP-Rule:MF_00112};; Short=GGGPS {ECO:0000256|HAMAP-Rule:MF_00112};; EC=2.5.1.41 {ECO:00
Geranylgeranylglyceryl phosphate synthase n=1 Tax=Thermococcus sp. CL1 RepID=I3ZVT5_9EURY
geranylgeranylglyceryl phosphate synthase
rifcsphigho2_02_scaffold_4251_13
unknown

Not on your lists

comp(12638..12961)
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4251_14
unknown

Not on your lists

13107..14213
-----------------
DNA (1107bp)
protein (369aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4251_15
unknown

Not on your lists

14576..14902
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4251_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(14899..15915)
-----------------
DNA (1017bp)
protein (339aa)
Fatty acid desaturase n=2 Tax=Singulisphaera acidiphila RepID=L0DGD0_SINAD
Fatty acid desaturase
Fatty acid desaturase {ECO:0000313|EMBL:AGA27858.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidi
rifcsphigho2_02_scaffold_4251_17
unknown

Not on your lists

16143..18548
-----------------
DNA (2406bp)
protein (802aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4251_18
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

18676..18996
-----------------
DNA (321bp)
protein (107aa)
Uncharacterized protein n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9XD69_9EURY
hypothetical protein Tax=AR9
hypothetical protein
rifcsphigho2_02_scaffold_4251_19
GWA2_OD1_43_9, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

19085..20317
-----------------
DNA (1233bp)
protein (411aa)
rmr:Rmar_0623 threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=67729 bin=ACD48 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=ACD48 organism_group=OP11 (Microgenomates) organism_desc=OP11
Threonine-tRNA ligase {ECO:0000313|EMBL:KKT24922.1}; TaxID=1619040 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Magasanikbacteria) bacterium GW2011_GWA2_43_9.;"
threonyl-tRNA synthetase
Displaying 19 items

View Taxonomy