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rifcsphigho2_02_scaffold_5086

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5086_1
CG_Woesearch_02, Woesearchaeota, Archaea

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3..1145
-----------------
DNA (1143bp)
protein (381aa)
ychF; translation-associated GTPase; K06942 Tax=CG_Woesearch_02
GTPase domain-containing protein; K06942 id=5042272 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_5086_2
CG_CPR16-01, CG_CPR16, Bacteria

Not on your lists

comp(1157..1825)
-----------------
DNA (669bp)
protein (223aa)
type 12 methyltransferase; K15256 tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] Tax=CG_CPR16-01
Methyltransferase type 12 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D5B0_METSW
type 12 methyltransferase
rifcsphigho2_02_scaffold_5086_3
RBG_19FT_COMBO_Deltaproteobacteria_58_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1835..3358)
-----------------
DNA (1524bp)
protein (508aa)
response regulator Tax=RBG_19FT_COMBO_Deltaproteobacteria_58_16_curated
Response receiver sensor diguanylate cyclase id=3263303 bin=GWC2_Deltaproteobacteria_56_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
diguanylate cyclase domain-containing protein
rifcsphigho2_02_scaffold_5086_4

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comp(3351..4304)
-----------------
DNA (954bp)
protein (318aa)
SpoVT/AbrB domain protein n=12 Tax=Sulfolobus RepID=C3MR72_SULIL id=5103746 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_L00346 {ECO:0000313|EMBL:GAF82218.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
SpoVT/AbrB protein
rifcsphigho2_02_scaffold_5086_5
unknown

Not on your lists

4566..4943
-----------------
DNA (378bp)
protein (126aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_6
unknown

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4960..5394
-----------------
DNA (435bp)
protein (145aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_7

Not on your lists

5693..6772
-----------------
DNA (1080bp)
protein (360aa)
hypothetical protein
DHH phosphoesterases id=5240803 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF59795.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_5086_8
unknown

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6844..7380
-----------------
DNA (537bp)
protein (179aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_9

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comp(7397..7792)
-----------------
DNA (396bp)
protein (132aa)
Zn-ribbon containing protein id=5800623 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Zn-ribbon containing protein {ECO:0000313|EMBL:AJF61954.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
Zn-ribbon containing protein
rifcsphigho2_02_scaffold_5086_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(7800..8183)
-----------------
DNA (384bp)
protein (128aa)
Uncharacterized protein n=2 Tax=Methanothermobacter RepID=D9PV24_METTM id=5103011 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein Tax=CG_Woesearch_02
rifcsphigho2_02_scaffold_5086_11
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(8187..8819)
-----------------
DNA (633bp)
protein (211aa)
small GTP-binding protein; K06883 id=5044930 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
small GTP-binding protein; K06883 Tax=AR4
Small GTP-binding protein
rifcsphigho2_02_scaffold_5086_12
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

9108..9389
-----------------
DNA (282bp)
protein (94aa)
hypothetical protein id=5044933 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein Tax=AR4
hypothetical protein
rifcsphigho2_02_scaffold_5086_13
unknown

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comp(9397..9690)
-----------------
DNA (294bp)
protein (98aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_14

Not on your lists

9965..11488
-----------------
DNA (1524bp)
protein (508aa)
Putative ATPase id=5799867 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61198.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
ATPase
rifcsphigho2_02_scaffold_5086_15
unknown

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comp(11726..12364)
-----------------
DNA (639bp)
protein (213aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_16
unknown

Not on your lists

comp(12603..13232)
-----------------
DNA (630bp)
protein (210aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_17
R_PER_46_8, Bacteria

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comp(13229..14650)
-----------------
DNA (1422bp)
protein (474aa)
branched chain amino acid ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPHIGHO2_01_FULL_PER_46_8_curated
Branched chain amino acid ABC transporter id=1843278 bin=GWB2_Proteobacteria_55_19 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
ABC transporter substrate-binding protein
rifcsphigho2_02_scaffold_5086_18

Not on your lists


14777..16333
-----------------
DNA (1557bp)
protein (519aa)
Glycyl-tRNA synthetase id=5799897 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Glycyl-tRNA synthetase {ECO:0000313|EMBL:AJF61228.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
rifcsphigho2_02_scaffold_5086_19
unknown

Not on your lists

16330..17460
-----------------
DNA (1131bp)
protein (377aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_20

Not on your lists

17553..17915
-----------------
DNA (363bp)
protein (121aa)
Replication factor A1 {ECO:0000313|EMBL:KHO50628.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
single-stranded DNA-binding replication protein A, large (70 kD) subunit; K07466 replication factor A1 id=5048480 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
replication factor A1
rifcsphigho2_02_scaffold_5086_21
unknown

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17926..18363
-----------------
DNA (438bp)
protein (146aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_22
Parcubacteria bacterium GW2011_GWF2_50_9, Parcubacteria, Bacteria

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comp(18860..19273)
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW22594.1}; TaxID=1618975 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_50_9.;"
transmembrane_regions 17..39 id=35925 bin=ACD30 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11
rifcsphigho2_02_scaffold_5086_23
Coccidioides posadasii, Coccidioides, Onygenales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

19376..20224
-----------------
DNA (849bp)
protein (283aa)
RNA recognition motif containing protein n=2 Tax=Coccidioides posadasii RepID=C5P327_COCP7
RNA recognition motif containing protein; K11294 nucleolin
Putative uncharacterized protein {ECO:0000313|EMBL:EFW22280.1}; TaxID=443226 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; mitosporic On
rifcsphigho2_02_scaffold_5086_24
unknown

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20277..20681
-----------------
DNA (405bp)
protein (135aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5086_25

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comp(20699..21703)
-----------------
DNA (1005bp)
protein (335aa)
hypothetical protein id=5048098 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO45143.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
rifcsphigho2_02_scaffold_5086_26
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(21712..22833)
-----------------
DNA (1122bp)
protein (374aa)
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein id=5048511 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_5086_27
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(22835..25123)
-----------------
DNA (2289bp)
protein (763aa)
hypothetical protein Tax=CG_Woesearch_03
hypothetical protein id=5043756 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_5086_28

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comp(25123..25269)
-----------------
DNA (147bp)
protein (49aa)
Marine sediment metagenome DNA, contig: S01H1_S33064 {ECO:0000313|EMBL:GAG30110.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Displaying 28 items

View Taxonomy