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rifcsphigho2_02_scaffold_5864

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5864_1
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

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3..305
-----------------
DNA (303bp)
protein (101aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000362D490
Bacterio-opsin activator HTH domain protein Tax=GWA2_OD1_31_28_partial
rifcsphigho2_02_scaffold_5864_2
unknown

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382..753
-----------------
DNA (372bp)
protein (124aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_3
unknown

Not on your lists

750..839
-----------------
DNA (90bp)
protein (30aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_trna_3
unknown

Not on your lists

comp(763..859)
-----------------
DNA (97bp)
transferRNA
rifcsphigho2_02_scaffold_5864_trna_1
unknown

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1205..1280
-----------------
DNA (76bp)
transferRNA
rifcsphigho2_02_scaffold_5864_4
unknown

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comp(1286..1708)
-----------------
DNA (423bp)
protein (141aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_5
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

1941..3668
-----------------
DNA (1728bp)
protein (576aa)
sodium/hydrogen exchanger Tax=CG_Woesearch_01
Transporter, CPA2 family id=5799540 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
sodium/hydrogen exchanger
rifcsphigho2_02_scaffold_5864_6
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3702..3935)
-----------------
DNA (234bp)
protein (78aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z030_METPS
hypothetical protein; K07574 RNA-binding protein Tax=CG_Woesearch_02
hypothetical protein
rifcsphigho2_02_scaffold_5864_7

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comp(3937..4761)
-----------------
DNA (825bp)
protein (275aa)
Marine sediment metagenome DNA, contig: S12H4_S07920 {ECO:0000313|EMBL:GAI97973.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Sugar kinase, YjeF-related protein family id=5800079 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
carbohydrate kinase
rifcsphigho2_02_scaffold_5864_8
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(4758..4919)
-----------------
DNA (162bp)
protein (54aa)
Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsphigho2_02_scaffold_5864_9
unknown

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5466..6890
-----------------
DNA (1425bp)
protein (475aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_10
unknown

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comp(7017..8363)
-----------------
DNA (1347bp)
protein (449aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_11
unknown

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comp(8447..8854)
-----------------
DNA (408bp)
protein (136aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_12
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(8997..9962)
-----------------
DNA (966bp)
protein (322aa)
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EIJ65378.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EIJ65378.1};; TaxID=859350 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumi
Antioxidant, AhpC/TSA family (EC:1.11.1.15)
Antioxidant, AhpC/TSA family n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D0Y5_9ARCH
rifcsphigho2_02_scaffold_5864_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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10033..10401
-----------------
DNA (369bp)
protein (123aa)
Transcriptional regulator (NtrC family) protein (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UZU1_9AQUI
response regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
PAS/PAC sensor hybrid histidine kinase
rifcsphigho2_02_scaffold_5864_trna_2
unknown

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comp(10494..10577)
-----------------
DNA (84bp)
transferRNA
rifcsphigho2_02_scaffold_5864_14
unknown

Not on your lists

10654..11124
-----------------
DNA (471bp)
protein (157aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_15
unknown

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11198..12394
-----------------
DNA (1197bp)
protein (399aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_16
unknown

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12715..13050
-----------------
DNA (336bp)
protein (112aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_17
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(13047..13325)
-----------------
DNA (279bp)
protein (93aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037911A7
Transcriptional regulator {ECO:0000313|EMBL:KIL42119.1}; TaxID=1590651 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
rifcsphigho2_02_scaffold_5864_18
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(13327..13638)
-----------------
DNA (312bp)
protein (104aa)
rps10p; 30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 Tax=CG_Woesearch_03
30S ribosomal protein S10 id=5800771 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ribosomal protein S10P Rps10p
rifcsphigho2_02_scaffold_5864_19

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comp(13726..15018)
-----------------
DNA (1293bp)
protein (431aa)
translation elongation factor 1a (ef-1a/ef-tu) (EC:2.7.7.4); K03231 elongation factor 1-alpha id=5043959 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118};; Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118};
Elongation factor 1-alpha
rifcsphigho2_02_scaffold_5864_20
unknown

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15400..15627
-----------------
DNA (228bp)
protein (76aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_21
unknown

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15627..16082
-----------------
DNA (456bp)
protein (152aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5864_22
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(16176..17066)
-----------------
DNA (891bp)
protein (297aa)
Sulfate permease-like transporter, MFS superfamily n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L0V7_METHD
sulfate permease-like transporter, MFS superfamily
Sulfate permease-like transporter, MFS superfamily {ECO:0000313|EMBL:AGB50585.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovo
Displaying 25 items

View Taxonomy