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rifcsphigho2_02_scaffold_7412

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_7412_1
unknown

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58..852
-----------------
DNA (795bp)
protein (265aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7412_2

Not on your lists

960..1622
-----------------
DNA (663bp)
protein (221aa)
hypothetical protein id=5048466 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45500.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_7412_3

Not on your lists

1789..2046
-----------------
DNA (258bp)
protein (86aa)
hypothetical protein n=1 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00038207DF
Uncharacterized protein {ECO:0000313|EMBL:AIF23406.1}; TaxID=1456385 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote SAT1000_15_E07.;"
rifcsphigho2_02_scaffold_7412_4

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2063..2296
-----------------
DNA (234bp)
protein (78aa)
ski2-type helicase; K03726 helicase [EC:3.6.4.-] id=5045823 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Helicase {ECO:0000313|EMBL:KHO46436.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46436.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_7412_5

Not on your lists

2396..3613
-----------------
DNA (1218bp)
protein (406aa)
Helicase {ECO:0000313|EMBL:KHO46436.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46436.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
ski2-type helicase; K03726 helicase [EC:3.6.4.-] id=5045823 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA/RNA helicase
rifcsphigho2_02_scaffold_7412_6
unknown

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comp(3618..3959)
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7412_7
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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4087..4578
-----------------
DNA (492bp)
protein (164aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IIC1_9PLAN
Putative uncharacterized protein Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
rifcsphigho2_02_scaffold_7412_8
Geoglobus ahangari, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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4575..4886
-----------------
DNA (312bp)
protein (104aa)
Putative uncharacterized protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDN8_ARCPA
Uncharacterized protein family (UPF0175) {ECO:0000313|EMBL:AKG91211.1}; TaxID=113653 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" source="Geoglobus ah
hypothetical protein
rifcsphigho2_02_scaffold_7412_9

Not on your lists

comp(4959..6365)
-----------------
DNA (1407bp)
protein (469aa)
thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45] id=5044059 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Thymidylate synthase {ECO:0000313|EMBL:KHO46902.1}; EC=2.1.1.45 {ECO:0000313|EMBL:KHO46902.1};; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
thymidylate synthase
rifcsphigho2_02_scaffold_7412_10
unknown

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comp(6362..6817)
-----------------
DNA (456bp)
protein (152aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7412_11
AR15, Woesearchaeaota, DPANN, Archaea

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6897..7592
-----------------
DNA (696bp)
protein (232aa)
Uncharacterized protein id=5799738 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein Tax=AR15
hypothetical protein
rifcsphigho2_02_scaffold_7412_trna_1
unknown

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comp(7601..7701)
-----------------
DNA (101bp)
transferRNA
rifcsphigho2_02_scaffold_7412_12
R_OP3X_45_10, OP3X, Bacteria

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7796..9823
-----------------
DNA (2028bp)
protein (676aa)
Tax=RIFCSPLOWO2_01_FULL_OP3X_45_10_curated
rifcsphigho2_02_scaffold_7412_13
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(9825..11639)
-----------------
DNA (1815bp)
protein (605aa)
hypothetical protein; K10747 DNA ligase 1 [EC:6.5.1.1] Tax=RBG_13_Woesearchaeota_36_6_curated
DNA ligase id=5800225 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP-dependent DNA ligase
rifcsphigho2_02_scaffold_7412_14
unknown

Not on your lists

comp(11739..12065)
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7412_15
AR6, Pacearchaeaota, DPANN, Archaea

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12182..12943
-----------------
DNA (762bp)
protein (254aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A6C08
transcriptional regulator TrmB Tax=AR6
transcriptional regulator TrmB
rifcsphigho2_02_scaffold_7412_16

Not on your lists

comp(13014..13145)
-----------------
DNA (132bp)
protein (44aa)
Marine sediment metagenome DNA, contig: S01H1_S03205 {ECO:0000313|EMBL:GAF89404.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_7412_17
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

13238..14203
-----------------
DNA (966bp)
protein (322aa)
Tax=CG_Woesearch_03
rifcsphigho2_02_scaffold_7412_18

Not on your lists

comp(14211..14672)
-----------------
DNA (462bp)
protein (154aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJD2_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:EFK96347.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
Displaying 19 items

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