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rifcsphigho2_02_scaffold_27969

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_27969_1
R_OD1_Giovannonibacteria_43_16, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2..340)
-----------------
DNA (339bp)
protein (113aa)
methyltransferase (EC:2.1.1.-); K15256 tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] Tax=RIFCSPHIGHO2_02_OD1_Giovannonibacteria_43_16_curated
rifcsphigho2_02_scaffold_27969_2
R_OD1_Giovannonibacteria_43_16, Giovannonibacteria, Parcubacteria, Bacteria

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comp(309..1547)
-----------------
DNA (1239bp)
protein (413aa)
putative diaminopimelate decarboxylase (EC:4.1.1.20)
diaminopimelate decarboxylase n=1 Tax=Ralstonia solanacearum RepID=UPI0001816B46
lysA; diaminopimelate decarboxylase Tax=RIFCSPHIGHO2_02_OD1_Giovannonibacteria_43_16_curated
rifcsphigho2_02_scaffold_27969_3
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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1643..2593
-----------------
DNA (951bp)
protein (317aa)
Transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KKU99850.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
Transcriptional regulator id=5240686 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_27969_4
AR20, Woesearchaeaota, DPANN, Archaea

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comp(2596..2940)
-----------------
DNA (345bp)
protein (115aa)
hypothetical protein
id=5103470 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_02_scaffold_27969_5
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(2921..3712)
-----------------
DNA (792bp)
protein (264aa)
hypothetical protein
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
id=5103469 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_02_scaffold_27969_6

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3800..4435
-----------------
DNA (636bp)
protein (212aa)
Marine sediment metagenome DNA, contig: S12H4_L00950 {ECO:0000313|EMBL:GAI82642.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Peptidase S26B, eukaryotic signal peptidase id=5043727 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_27969_7

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4450..4767
-----------------
DNA (318bp)
protein (106aa)
Marine sediment metagenome DNA, contig: S01H1_S38339 {ECO:0000313|EMBL:GAG48814.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
DNA-directed RNA polymerase subunit id=5799719 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Transcription-associated protein TFIIS
rifcsphigho2_02_scaffold_27969_8
unknown

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5230..5658
-----------------
DNA (429bp)
protein (143aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27969_9
AR9, Woesearchaeaota, DPANN, Archaea

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comp(5735..5935)
-----------------
DNA (201bp)
protein (67aa)
Prophage antirepressor n=1 Tax=uncultured bacterium RepID=K2CUD2_9BACT
prophage antirepressor Tax=AR9
prophage antirepressor
rifcsphigho2_02_scaffold_27969_10
unknown

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comp(6029..6592)
-----------------
DNA (564bp)
protein (188aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27969_11
unknown

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comp(6644..6733)
-----------------
DNA (90bp)
protein (30aa)

This feature has no annotations

Displaying 11 items

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