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rifcsphigho2_02_scaffold_25011

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_25011_1
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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2..1711
-----------------
DNA (1710bp)
protein (570aa)
Hef nuclease; K10896 fanconi anemia group M protein Tax=RBG_13_Woesearchaeota_36_6_curated
Hef nuclease; K10896 fanconi anemia group M protein id=5041753 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Hef nuclease
rifcsphigho2_02_scaffold_25011_2
unknown

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comp(1702..2409)
-----------------
DNA (708bp)
protein (236aa)

This feature has no annotations

rifcsphigho2_02_scaffold_25011_3
unknown

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comp(2452..3132)
-----------------
DNA (681bp)
protein (227aa)

This feature has no annotations

rifcsphigho2_02_scaffold_25011_4
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(3164..3550)
-----------------
DNA (387bp)
protein (129aa)
toprim domain protein Tax=RBG_13_Woesearchaeota_36_6_curated
TOPRIM domain-containing protein id=5050201 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_25011_5

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3601..4797
-----------------
DNA (1197bp)
protein (399aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B8391
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO51189.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rifcsphigho2_02_scaffold_25011_6

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4815..5210
-----------------
DNA (396bp)
protein (132aa)
hypothetical protein; K00992 [EC:2.7.7.-] id=5041758 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47186.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
rifcsphigho2_02_scaffold_25011_7

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5742..6746
-----------------
DNA (1005bp)
protein (335aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5042300 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
LSU ribosomal protein L3P
rifcsphigho2_02_scaffold_25011_8

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6743..7552
-----------------
DNA (810bp)
protein (270aa)
50S ribosomal protein L4P, large subunit ribosomal protein L4e {ECO:0000313|EMBL:AJS12098.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl4lp; 50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e id=5041760 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L4
rifcsphigho2_02_scaffold_25011_9
CG_Woesearch_02, Woesearchaeota, Archaea

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7558..7869
-----------------
DNA (312bp)
protein (104aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=CG_Woesearch_02
50S ribosomal protein L23P
rifcsphigho2_02_scaffold_25011_10

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7871..8578
-----------------
DNA (708bp)
protein (236aa)
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2 id=5800061 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L2
rifcsphigho2_02_scaffold_25011_11

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8582..8965
-----------------
DNA (384bp)
protein (128aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=5042304 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S15
rifcsphigho2_02_scaffold_25011_12

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8971..9462
-----------------
DNA (492bp)
protein (164aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22
rifcsphigho2_02_scaffold_25011_13

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9459..10202
-----------------
DNA (744bp)
protein (248aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQQ3_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
rifcsphigho2_02_scaffold_25011_14
CG_Woesearch_02, Woesearchaeota, Archaea

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10199..10396
-----------------
DNA (198bp)
protein (66aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 id=5042307 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=CG_Woesearch_02
rifcsphigho2_02_scaffold_25011_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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10389..10697
-----------------
DNA (309bp)
protein (103aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000367012D
translation initiation factor 1 (eif-1/sui1); K03113 translation initiation factor 1 Tax=RBG_13_Woesearchaeota_36_6_curated
SUI1 family translation initiation factor
rifcsphigho2_02_scaffold_25011_16
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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10694..10957
-----------------
DNA (264bp)
protein (88aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
Ribonuclease P protein component 1 n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RE58_ARCPA
ribonuclease P, Rpp29
rifcsphigho2_02_scaffold_25011_17

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10954..11325
-----------------
DNA (372bp)
protein (124aa)
30S ribosomal protein S17P n=2 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=RS17_PYRHO
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12457.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P
rifcsphigho2_02_scaffold_25011_18

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11312..11713
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsphigho2_02_scaffold_25011_19
CG_Woesearch_02, Woesearchaeota, Archaea

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11851..12051
-----------------
DNA (201bp)
protein (67aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
rpl24p; 50S ribosomal protein L24P; K02895 large subunit ribosomal protein L24 Tax=CG_Woesearch_02
50S ribosomal protein L24P
rifcsphigho2_02_scaffold_25011_20
CG_Woesearch_02, Woesearchaeota, Archaea

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12061..12750
-----------------
DNA (690bp)
protein (230aa)
30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e Tax=CG_Woesearch_02
rps4e; 30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e id=5041771 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rps4e; ribosomal protein S4e Rps4e
rifcsphigho2_02_scaffold_25011_21

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12747..13262
-----------------
DNA (516bp)
protein (172aa)
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5
rifcsphigho2_02_scaffold_25011_22

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13259..13489
-----------------
DNA (231bp)
protein (77aa)
Small subunit ribosomal protein S14 {ECO:0000313|EMBL:KHO51227.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S14P
rifcsphigho2_02_scaffold_25011_23

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13501..13836
-----------------
DNA (336bp)
protein (112aa)
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rpsH; 30S ribosomal protein S8
rifcsphigho2_02_scaffold_25011_24

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13839..14387
-----------------
DNA (549bp)
protein (183aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035F6817
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12291.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl6p; 50S ribosomal protein L6
rifcsphigho2_02_scaffold_25011_25

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14388..14951
-----------------
DNA (564bp)
protein (188aa)
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO51172.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Ribosomal protein L32e, conserved site id=5800046 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl32e; 50S ribosomal protein L32e
rifcsphigho2_02_scaffold_25011_26

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14948..15400
-----------------
DNA (453bp)
protein (151aa)
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
LSU ribosomal protein l19e; K02885 large subunit ribosomal protein L19e id=5042319 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl19e; 50S ribosomal protein L19
rifcsphigho2_02_scaffold_25011_27
Methanocaldococcus jannaschii, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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15397..15750
-----------------
DNA (354bp)
protein (118aa)
50S ribosomal protein L18P n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RL18_METJA
rpl18p; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=243232 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanoca
Displaying 27 items

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