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rifcsphigho2_02_scaffold_30186

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_30186_1
unknown

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comp(2..664)
-----------------
DNA (663bp)
protein (221aa)

This feature has no annotations

rifcsphigho2_02_scaffold_30186_2
CG_Woesearch_01, Woesearchaeota, Archaea

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1171..1416
-----------------
DNA (246bp)
protein (82aa)
DNA-directed RNA polymerase subunit H; K03053 DNA-directed RNA polymerase subunit H [EC:2.7.7.6] Tax=CG_Woesearch_01
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000373033A
DNA-directed RNA polymerase, subunit H
rifcsphigho2_02_scaffold_30186_3

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1409..2899
-----------------
DNA (1491bp)
protein (497aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] id=5043972 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:KHO46962.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO46962.1};; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_30186_4
CG_Woesearch_02, Woesearchaeota, Archaea

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2906..4708
-----------------
DNA (1803bp)
protein (601aa)
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] Tax=CG_Woesearch_02
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=5043971 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_30186_5
AR11, Woesearchaeaota, DPANN, Archaea

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4720..7350
-----------------
DNA (2631bp)
protein (877aa)
DNA-directed RNA polymerase subunit A' (EC:2.7.7.48); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=5043970 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase Tax=AR11
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_30186_6
CG_Woesearch_02, Woesearchaeota, Archaea

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7360..8484
-----------------
DNA (1125bp)
protein (375aa)
DNA-directed RNA polymerase subunit A''; K03042 DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] Tax=CG_Woesearch_02
DNA-directed RNA polymerase subunit A'' id=5800703 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit A''
rifcsphigho2_02_scaffold_30186_7
unknown

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comp(8810..9208)
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

rifcsphigho2_02_scaffold_30186_8

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9341..9628
-----------------
DNA (288bp)
protein (96aa)
50S ribosomal protein L30e n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EEY1_PYRF1
Ribosomal protein L30e (RP-L30e, RPL30) {ECO:0000313|EMBL:AIF00801.1}; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_
50S ribosomal protein L7Ae/L30e/S12e/Gadd45
rifcsphigho2_02_scaffold_30186_9
CG_Woesearch_01, Woesearchaeota, Archaea

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9628..10044
-----------------
DNA (417bp)
protein (139aa)
archaeal NusA family KH domain containing protein Tax=CG_Woesearch_01
transcription elongation factor NusA-like protein; K02600 N utilization substance protein A id=5043967 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_30186_10
CG_Woesearch_02, Woesearchaeota, Archaea

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10047..10484
-----------------
DNA (438bp)
protein (146aa)
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=CG_Woesearch_02
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=5043966 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S12
rifcsphigho2_02_scaffold_30186_11
CG_Woesearch_03, Woesearchaeota, Archaea

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10575..11168
-----------------
DNA (594bp)
protein (198aa)
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 Tax=CG_Woesearch_03
30S ribosomal protein S7 id=5799588 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S7
rifcsphigho2_02_scaffold_30186_12
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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11243..11938
-----------------
DNA (696bp)
protein (232aa)
UPF0176 protein Fleli_3244 n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4ANP0_FLELS
sulfurtransferase
UPF0176 protein Fleli_3244 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (stra
Displaying 12 items

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