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rifcsphigho2_02_scaffold_19430

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_19430_1

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comp(45..2972)
-----------------
DNA (2928bp)
protein (976aa)
id=5047464 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO45282.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsphigho2_02_scaffold_19430_2
Lyngbya sp. PCC 8106, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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3314..3517
-----------------
DNA (204bp)
protein (68aa)
Uncharacterized protein n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YX77_LYNSP
Uncharacterized protein {ECO:0000313|EMBL:EAW34353.1}; TaxID=313612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Lyngbya
RNA-binding S4 domain-containing protein
rifcsphigho2_02_scaffold_19430_3

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comp(4059..4460)
-----------------
DNA (402bp)
protein (134aa)
SSU ribosomal protein s8e; K02995 small subunit ribosomal protein S8e id=5048696 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8e {ECO:0000256|HAMAP-Rule:MF_00029, ECO:0000256|SAAS:SAAS00018121}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
30S ribosomal protein S8e
rifcsphigho2_02_scaffold_19430_4
AR15, Woesearchaeaota, DPANN, Archaea

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4844..5173
-----------------
DNA (330bp)
protein (110aa)
Like-Sm ribonucleoprotein core id=5800790 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Like-Sm ribonucleoprotein core Tax=AR15
Like-Sm ribonucleoprotein core
rifcsphigho2_02_scaffold_19430_5
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(5350..5799)
-----------------
DNA (450bp)
protein (150aa)
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000255|HAMAP-Rule:MF_00161}; EC=3.4.23.36 {ECO:0000255|HAMAP-Rule:MF_00161};; Prolipoprotein signal peptidase {ECO:0000255|HAMAP-Rule:MF_00161}; Signal peptidase II
Lipoprotein signal peptidase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=LSPA_HALOH
rifcsphigho2_02_scaffold_19430_6
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5832..8336)
-----------------
DNA (2505bp)
protein (835aa)
Protein-arginine deiminase n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2GRL1_9GAMM rbh
protein-arginine deiminase
Protein-arginine deiminase {ECO:0000313|EMBL:AJD49424.1}; TaxID=391936 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax p
rifcsphigho2_02_scaffold_19430_7
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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comp(8457..9743)
-----------------
DNA (1287bp)
protein (429aa)
hypothetical protein n=3 Tax=Aminicenantes RepID=UPI00037C434B
hypothetical protein; K07133 Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
hypothetical protein
rifcsphigho2_02_scaffold_19430_8
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(9887..10327)
-----------------
DNA (441bp)
protein (147aa)
Tax=CG_Woesearch_01
rifcsphigho2_02_scaffold_19430_9
unknown

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comp(10331..11044)
-----------------
DNA (714bp)
protein (238aa)

This feature has no annotations

rifcsphigho2_02_scaffold_19430_trna_1
unknown

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comp(11310..11416)
-----------------
DNA (107bp)
transferRNA
rifcsphigho2_02_scaffold_19430_10
unknown

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comp(11488..12072)
-----------------
DNA (585bp)
protein (195aa)

This feature has no annotations

rifcsphigho2_02_scaffold_19430_11
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(12148..12489)
-----------------
DNA (342bp)
protein (114aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363D148
translation initiation factor IF-1; K03236 translation initiation factor 1A Tax=CG_Woesearch_02
Translation initiation factor 1A
rifcsphigho2_02_scaffold_19430_12
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(12675..13109)
-----------------
DNA (435bp)
protein (145aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rifcsphigho2_02_scaffold_19430_13

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13318..14088
-----------------
DNA (771bp)
protein (257aa)
Marine sediment metagenome DNA, contig: S03H2_S01882 {ECO:0000313|EMBL:GAH55063.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Putative uncharacterized protein id=4268656 bin=GWF2_CPR3_35_18 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=GWF2_CPR3_35_18 organism_group=CPR3
hypothetical protein
rifcsphigho2_02_scaffold_19430_14
AR11, Woesearchaeaota, DPANN, Archaea

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14154..15098
-----------------
DNA (945bp)
protein (315aa)
signal peptide peptidase SppA, 36K type; K04773 protease IV [EC:3.4.21.-] id=5046580 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protease IV Tax=AR11
Signal peptide peptidase SppA, 36K type
rifcsphigho2_02_scaffold_19430_15
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(15359..15769)
-----------------
DNA (411bp)
protein (137aa)
hypothetical protein; K09005 hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
hypothetical protein; K09005 hypothetical protein id=5240732 bin=GW2011_AR10_complete species=Rhodanobacter fulvus genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_19430_16
unknown

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16038..16103
-----------------
DNA (66bp)
protein (22aa)

This feature has no annotations

Displaying 17 items

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