ggKbase home page

rifcsphigho2_02_scaffold_1761

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_1761_1
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(1..1041)
-----------------
DNA (1041bp)
protein (347aa)
ybdK; glutamate--cysteine ligase (EC:6.3.-.-)
Glutamate--cysteine ligase, GCS2 id=5041676 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Glutamate--cysteine ligase, GCS2 Tax=AR4
rifcsphigho2_02_scaffold_1761_2

Not on your lists

1243..1878
-----------------
DNA (636bp)
protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50631.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
amino acid-binding ACT domain-containing protein id=5041677 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_1761_3
CG_Mariprof_05, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1848..2084)
-----------------
DNA (237bp)
protein (79aa)
malate dehydrogenase (NAD); K00024 malate dehydrogenase [EC:1.1.1.37] Tax=CG_Mariprof_05
malate dehydrogenase (EC:1.1.1.37)
malate dehydrogenase n=1 Tax=zeta proteobacterium SCGC AB-133-C04 RepID=UPI00036B52A2
rifcsphigho2_02_scaffold_1761_4
unknown

Not on your lists

comp(2302..2790)
-----------------
DNA (489bp)
protein (163aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_5
unknown

Not on your lists

3072..3395
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_6
unknown

Not on your lists

comp(3389..4261)
-----------------
DNA (873bp)
protein (291aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_7
unknown

Not on your lists

comp(4331..5263)
-----------------
DNA (933bp)
protein (311aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_8
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(5256..6125)
-----------------
DNA (870bp)
protein (290aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7)
diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Diaminopimelate epimerase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=DAPF_UNCMA
rifcsphigho2_02_scaffold_1761_9
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

Not on your lists

6223..6876
-----------------
DNA (654bp)
protein (218aa)
Uncharacterized protein n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GKZ2_SPICD
hypothetical protein Tax=RBG_13_Euryarchaeota_31_8_curated
hypothetical protein
rifcsphigho2_02_scaffold_1761_10
CG_OP9-01, Atribacteria, Bacteria

Not on your lists

6873..7232
-----------------
DNA (360bp)
protein (120aa)
Uncharacterized protein n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WK54_METH6
hypothetical protein Tax=CG_OP9-01
hypothetical protein
rifcsphigho2_02_scaffold_1761_11

Not on your lists

7453..7902
-----------------
DNA (450bp)
protein (150aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HGE8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KKM05590.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ATP-dependent DNA helicase RecQ
rifcsphigho2_02_scaffold_1761_12
R_OD1_Kaiserbacteria_55_17, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

7883..8743
-----------------
DNA (861bp)
protein (287aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E6K0_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_55_17_curated
phage antirepressor protein
rifcsphigho2_02_scaffold_1761_13
unknown

Not on your lists

comp(8774..9460)
-----------------
DNA (687bp)
protein (229aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_14

Not on your lists

9547..10284
-----------------
DNA (738bp)
protein (246aa)
transcriptional regulator TrmB
Transcriptional regulator, TrmB id=2823093 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan rbh
Transcriptional regulator, TrmB {ECO:0000313|EMBL:KKW24894.1}; TaxID=1620413 species="Bacteria.;" source="bacterium GW2011_GWC1_52_13.;"
rifcsphigho2_02_scaffold_1761_15
unknown

Not on your lists

comp(10357..10737)
-----------------
DNA (381bp)
protein (127aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_16
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

10946..11446
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein Tax=GWA2_OD1_31_28_partial
Putative uncharacterized protein id=4809988 bin=GWA2_OP3_52_12 species=Thermotoga lettingae genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
rifcsphigho2_02_scaffold_1761_17
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

11425..12207
-----------------
DNA (783bp)
protein (261aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos33H6 RepID=Q649Z3_9ARCH
hypothetical protein Tax=GWA2_OD1_31_28_partial
rifcsphigho2_02_scaffold_1761_18
CG_Moran_01, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

12213..13109
-----------------
DNA (897bp)
protein (299aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2) Tax=CG_Moran_01
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTC5_9GAMM
rifcsphigho2_02_scaffold_1761_19

Not on your lists

13330..14121
-----------------
DNA (792bp)
protein (264aa)
A/G-specific adenine glycosylase {ECO:0000313|EMBL:KHO50655.1}; EC=3.2.2.- {ECO:0000313|EMBL:KHO50655.1};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
UPI0003CFF0BE related cluster n=1 Tax=unknown RepID=UPI0003CFF0BE
Helix-hairpin-helix motif:HhH-GPD
rifcsphigho2_02_scaffold_1761_20
unknown

Not on your lists

comp(14118..14669)
-----------------
DNA (552bp)
protein (184aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_21
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14807..15517)
-----------------
DNA (711bp)
protein (237aa)
Uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMY8_9PLAN
hypothetical protein Tax=RBG_13_Deltaproteobacteria_65_10_curated
hypothetical protein
rifcsphigho2_02_scaffold_1761_22
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(15591..16571)
-----------------
DNA (981bp)
protein (327aa)
MarR family transcriptional regulator Tax=RBG_13_Pacearchaeota_36_9_curated
AsnC family transcriptional regulator; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA id=5044008 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Transcriptional regulator
rifcsphigho2_02_scaffold_1761_23
unknown

Not on your lists

16717..16974
-----------------
DNA (258bp)
protein (86aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_24
unknown

Not on your lists

16975..17823
-----------------
DNA (849bp)
protein (283aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1761_25
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

17947..18543
-----------------
DNA (597bp)
protein (199aa)
id=5048880 Tax=RBG_13_Pacearchaeota_36_9_curated
id=5048880 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_1761_26

Not on your lists

18530..19117
-----------------
DNA (588bp)
protein (196aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50932.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Uncharacterized protein id=5048881 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_1761_27
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

19114..19488
-----------------
DNA (375bp)
protein (125aa)
Predicted protein id=5800396 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Predicted protein Tax=AR15
hypothetical protein
rifcsphigho2_02_scaffold_1761_28
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

19535..19999
-----------------
DNA (465bp)
protein (155aa)
MgtC family magnesium (Mg2+) transporter n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR61_9ARCH
MgtC family magnesium (Mg2+) transporter {ECO:0000313|EMBL:CDI05206.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
putative membrane protein
rifcsphigho2_02_scaffold_1761_29
RBG_13_OP11_Gottesmanbacteria_45_10_curated, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(20018..21070)
-----------------
DNA (1053bp)
protein (351aa)
polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RBG_13_OP11_Gottesmanbacteria_45_10_curated
Polyprenyl synthetase id=2847831 bin=GWF1_Spirochaetes_51_8 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
polyprenyl synthetase
rifcsphigho2_02_scaffold_1761_30

Not on your lists

21226..21498
-----------------
DNA (273bp)
protein (91aa)
id=5046912 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45858.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Displaying items 1-30 of 55 in total

View Taxonomy