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rifcsphigho2_02_scaffold_1912

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_1912_1

Not on your lists

comp(2..2575)
-----------------
DNA (2574bp)
protein (858aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN24787.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cell surface protein
rifcsphigho2_02_scaffold_1912_2
CG_Micra_05, Micraarchaeota, Archaea

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comp(2610..5081)
-----------------
DNA (2472bp)
protein (824aa)
hypothetical protein Tax=CG_Micra_05
rifcsphigho2_02_scaffold_1912_3
unknown

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comp(5078..5566)
-----------------
DNA (489bp)
protein (163aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1912_4

Not on your lists

comp(5892..6194)
-----------------
DNA (303bp)
protein (101aa)
Marine sediment metagenome DNA, contig: S01H1_S13048 {ECO:0000313|EMBL:GAG01406.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_02_scaffold_1912_5
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(6160..19938)
-----------------
DNA (13779bp)
protein (4593aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI000345AD7A
hypothetical protein
Conserved repeat domain protein {ECO:0000313|EMBL:ABQ06981.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacter
rifcsphigho2_02_scaffold_1912_6
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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comp(20321..21580)
-----------------
DNA (1260bp)
protein (420aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000375227B
Uncharacterized protein Tax=GWA2_WOR_2_47_8_curated
rifcsphigho2_02_scaffold_1912_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(21666..21986)
-----------------
DNA (321bp)
protein (107aa)
hypothetical protein; K03540 ribonuclease P protein subunit RPR2 [EC:3.1.26.5] Tax=CG_Woesearch_02
Ribonuclease P protein component 4 id=5799801 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RNAse P, Rpr2/Rpp21 subunit
rifcsphigho2_02_scaffold_1912_8
unknown

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comp(22234..22623)
-----------------
DNA (390bp)
protein (130aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1912_9
R_RIF_OD1_06_39_25, RIF-OD1-6, Parcubacteria, Bacteria

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23216..23791
-----------------
DNA (576bp)
protein (192aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_06_39_25_curated
Putative uncharacterized protein id=4507273 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
rifcsphigho2_02_scaffold_1912_10
R_RIF_OD1_06_39_25, RIF-OD1-6, Parcubacteria, Bacteria

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23824..24087
-----------------
DNA (264bp)
protein (88aa)
Uncharacterized protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWW6_FLAPJ
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_06_39_25_curated
antirepressor
rifcsphigho2_02_scaffold_1912_11

Not on your lists

comp(24089..26161)
-----------------
DNA (2073bp)
protein (691aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] id=7718340 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
membrane-bound proton-translocating pyrophosphatase
rifcsphigho2_02_scaffold_1912_12
AR15, Woesearchaeaota, DPANN, Archaea

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comp(26478..27434)
-----------------
DNA (957bp)
protein (319aa)
tRNA (Cytosine-48,49-C(5)-) methyltransferase Tax=AR15
tRNA (Cytosine-48,49-C(5)-) methyltransferase id=5800672 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RNA methylase, NOL1/NOP2/sun family
rifcsphigho2_02_scaffold_1912_13
unknown

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comp(27506..27781)
-----------------
DNA (276bp)
protein (92aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1912_14
Treponema sp. JC4, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(27808..29151)
-----------------
DNA (1344bp)
protein (448aa)
Uncharacterized protein n=1 Tax=Treponema sp. JC4 RepID=I0XBH1_9SPIO
Uncharacterized protein {ECO:0000313|EMBL:EID85987.1}; TaxID=1124982 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema sp. JC4.;"
hypothetical protein
rifcsphigho2_02_scaffold_1912_15

Not on your lists

29332..30153
-----------------
DNA (822bp)
protein (274aa)
MarR family transcriptional regulator {ECO:0000313|EMBL:KHO51436.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Putative membrane-associated protein/domain protein id=5799953 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative membrane-associated protein/domain protein
rifcsphigho2_02_scaffold_1912_16
CG_Woesearch_01, Woesearchaeota, Archaea

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30238..30846
-----------------
DNA (609bp)
protein (203aa)
id=5043675 Tax=CG_Woesearch_01
id=5043675 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_1912_17
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

30834..31316
-----------------
DNA (483bp)
protein (161aa)
hypothetical protein
HEPN Tax=CG_Woesearch_01
HEPN id=5043676 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_1912_18

Not on your lists

comp(31332..31796)
-----------------
DNA (465bp)
protein (155aa)
Marine sediment metagenome DNA, contig: S01H1_S02997 {ECO:0000313|EMBL:GAF87336.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
NMD3-related protein (nonsense mediated mRNA decay); K07562 nonsense-mediated mRNA decay protein 3 id=5043728 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_1912_19
GWF2_CPR3_35_18, CPR3, Bacteria

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comp(31851..32675)
-----------------
DNA (825bp)
protein (275aa)
ilvE1; putative branched-chain-amino-acid aminotransferase IlvE (EC:2.6.1.42)
Aminotransferase, class IV id=2087753 bin=GWE2_CPR3_35_7 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
Aminotransferase, class IV Tax=GWF2_CPR3_35_18
rifcsphigho2_02_scaffold_1912_20
R_OD1_40_30, Parcubacteria, Bacteria

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comp(32677..33237)
-----------------
DNA (561bp)
protein (187aa)
tRNA (cmo5U34)-methyltransferase (EC:2.1.1.-)
methyltransferase (EC:2.1.1.-); K15256 tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] id=5240685 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_40_30_curated
Displaying 20 items

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