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rifcsphigho2_02_scaffold_890

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_890_trna_1
unknown

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22..96
DNA (75bp)
transferRNA
rifcsphigho2_02_scaffold_890_1
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(125..1216)
DNA (1092bp) protein (364aa)
Type 2 DNA topoisomerase 6 subunit A; K03166 DNA topoisomerase VI subunit A [EC:5.99.1.3] Tax=RBG_13_Woesearchaeota_36_6_curated
Type 2 DNA topoisomerase 6 subunit A id=5800437 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Type 2 DNA topoisomerase 6 subunit A
rifcsphigho2_02_scaffold_890_2
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(1213..2838)
DNA (1626bp) protein (542aa)
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] Tax=CG_Woesearch_02
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] id=5048468 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA topoisomerase VI, subunit B
rifcsphigho2_02_scaffold_890_3
AR11, Woesearchaeaota, DPANN, Archaea

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comp(2840..3379)
DNA (540bp) protein (180aa)
KH domain protein; K06961 ribosomal RNA assembly protein Tax=AR11
KH domain protein id=5799968 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_890_4

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comp(3405..4112)
DNA (708bp) protein (236aa)
Putative serine/threonine protein kinase (RIOK1) {ECO:0000313|EMBL:AIF00782.1}; EC=2.7.11.1 {ECO:0000313|EMBL:AIF00782.1};; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" sour
Non-specific serine/threonine protein kinase; K07178 RIO kinase 1 [EC:2.7.11.1] id=5048470 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
serine/threonine protein kinase (EC:2.7.11.-)
rifcsphigho2_02_scaffold_890_5
CG_Woesearch_02, Woesearchaeota, Archaea

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4643..5899
DNA (1257bp) protein (419aa)
DNA primase Tax=CG_Woesearch_02
DNA primase id=5048471 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_890_6
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

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comp(5958..7103)
DNA (1146bp) protein (382aa)
5'-nucleotidase (EC:3.1.3.5); K01081 5'-nucleotidase [EC:3.1.3.5] Tax=GWF2_WOR_2_43_52_curated
UPI000297167D related cluster id=3681785 bin=GWF2_OP3_43_52 species=uncultured Flavobacteriia bacterium genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rifcsphigho2_02_scaffold_890_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(7100..8410)
DNA (1311bp) protein (437aa)
peptidil-prolyl cis-trans isomerase (EC:5.2.1.8); K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] Tax=CG_Woesearch_02
prsA; Foldase protein PrsA (EC:5.2.1.8)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037B793C
rifcsphigho2_02_scaffold_890_8

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8486..9844
DNA (1359bp) protein (453aa)
hypothetical protein; K06915 id=5048473 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45507.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_890_9

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comp(9841..10059)
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50498.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5048477 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_890_10

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comp(10073..11194)
DNA (1122bp) protein (374aa)
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:KHO50166.1}; EC=6.1.1.2 {ECO:0000313|EMBL:KHO50166.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036DB9B1
Tryptophan-tRNA ligase
rifcsphigho2_02_scaffold_890_11
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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comp(11196..11843)
DNA (648bp) protein (216aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=5093974 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Ribulose-phosphate 3-epimerase Tax=GWA2_OD1_40_9
ribulose-phosphate 3-epimerase
rifcsphigho2_02_scaffold_890_12
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(11929..12678)
DNA (750bp) protein (250aa)
tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=523846 species="A
Tryptophan synthase alpha chain n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GX08_METFV
rifcsphigho2_02_scaffold_890_13
RLO_RIF03_38_15, RIF3, Bacteria

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comp(12675..13832)
DNA (1158bp) protein (386aa)
trpB1; tryptophan synthase subunit beta (EC:4.2.1.20); K01696 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
tryptophan synthase beta chain (EC:4.2.1.20)
tryptophan synthase, beta subunit; K01696 tryptophan synthase beta chain [EC:4.2.1.20] id=5240922 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_890_14
AR10, Diapherotrites, DPANN, Archaea

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comp(13829..15160)
DNA (1332bp) protein (444aa)
indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase; K13498 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] id=5240921 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Indole-3-glycerol phosphate synthase; K13498 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] Tax=AR10
rifcsphigho2_02_scaffold_890_15
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(15157..16140)
DNA (984bp) protein (328aa)
Anthranilate phosphoribosyltransferase n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VWX2_THESW
anthranilate phosphoribosyltransferase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsphigho2_02_scaffold_890_16
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

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comp(16103..16705)
DNA (603bp) protein (201aa)
glutamine amidotransferase of anthranilate synthase; K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
glutamine amidotransferase of anthranilate synthase; K01658 anthranilate synthase component II [EC:4.1.3.27] id=98419 bin=ACD65 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=ACD65 organism_group=PER (Peregrinibacteria) organism_desc=PER
anthranilate synthase / indole-3-glycerol phosphate synthase (EC:4.1.3.27)
rifcsphigho2_02_scaffold_890_17
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

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comp(16707..18134)
DNA (1428bp) protein (476aa)
anthranilate synthase; K13503 anthranilate synthase [EC:4.1.3.27] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
anthranilate synthase (EC:4.1.3.27); K13503 anthranilate synthase [EC:4.1.3.27] id=5091498 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
anthranilate synthase component I (EC:4.1.3.27)
rifcsphigho2_02_scaffold_890_18

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18217..18852
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50631.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
amino acid-binding ACT domain-containing protein id=5041677 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_890_19
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(18833..19294)
DNA (462bp) protein (154aa)
hypothetical protein; K07581 hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
exosome subunit; K07581 hypothetical protein id=5048514 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
exosome subunit
rifcsphigho2_02_scaffold_890_20
CG_Woesearch_02, Woesearchaeota, Archaea

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19369..20247
DNA (879bp) protein (293aa)
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein id=5048515 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_890_21
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(20240..20983)
DNA (744bp) protein (248aa)
beta-lactamase superfamily hydrolase Tax=CG_Woesearch_02
Metal-dependent hydrolase, beta-lactamase superfamily III id=5799925 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
beta-lactamase superfamily hydrolase
rifcsphigho2_02_scaffold_890_22
Acholeplasma brassicae, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

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21463..21882
DNA (420bp) protein (140aa)
Similar toi acid phosphatase/vanadium-dependent haloperoxidase-related protein from A. thaliana (At3g21620) n=1 Tax=Acholeplasma brassicae RepID=U4KQC2_9MOLU
similar toi acid phosphatase/vanadium-dependent haloperoxidase-related protein from A. thaliana (At3g21620)
Similar toi acid phosphatase/vanadium-dependent haloperoxidase-related protein from A. thaliana (At3g21620) {ECO:0000313|EMBL:CCV66636.1}; TaxID=61635 species="Bacteria; Tenericutes; Mollicutes; Achol
rifcsphigho2_02_scaffold_890_23
CG_Kuenen_03, Kuenenbacteria, Parcubacteria, Bacteria

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comp(21875..22777)
DNA (903bp) protein (301aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=CG_Kuenen_03
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] id=5093325 bin=PER_GWE2_39_6 species=PER_GWE2_38_7 genus=PER_GWE2_38_7 taxon_order=PER_GWE2_38_7 taxon_class=PER_GWE2_38_7 phylum=PER tax=PER_GWE2_39_6 organism_group=PER (Peregrinibacteria)
ilvE; Branched-chain-amino-acid aminotransferase (EC:2.6.1.42)
rifcsphigho2_02_scaffold_890_24

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comp(22824..23690)
DNA (867bp) protein (289aa)
Conserved hypothetical membrane protein, auxin efflux carrier family n=1 Tax=uncultured archaeon RepID=D1JDW6_9ARCH
Conserved hypothetical membrane protein, auxin efflux carrier family {ECO:0000313|EMBL:CBH36724.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
auxin efflux carrier family protein
rifcsphigho2_02_scaffold_890_25

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comp(23744..24073)
DNA (330bp) protein (110aa)
Mannose-6-phosphate isomerase n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=C6A4C4_THESM
Uncharacterized protein {ECO:0000313|EMBL:KKN11936.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
mannose-6-phosphate isomerase
rifcsphigho2_02_scaffold_890_26
unknown

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24156..25403
DNA (1248bp) protein (416aa)

This feature has no annotations

rifcsphigho2_02_scaffold_890_27
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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25444..26214
DNA (771bp) protein (257aa)
yycJ; putative metallo-hydrolase YycJ (EC:3.-.-.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VCM4_9FIRM
beta-lactamase Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_02_scaffold_890_28
unknown

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26274..27494
DNA (1221bp) protein (407aa)

This feature has no annotations

rifcsphigho2_02_scaffold_890_29

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comp(27495..28481)
DNA (987bp) protein (329aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hyd
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=uncultured archaeon GZfos26G2 RepID=Q64BR7_9ARCH rbh
Displaying items 1-30 of 49 in total

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