ggKbase home page

rifcsphigho2_02_scaffold_3400

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_3400_trna_1
unknown

Not on your lists

20..93
DNA (74bp)
transferRNA
rifcsphigho2_02_scaffold_3400_1
unknown

Not on your lists

146..787
DNA (642bp) protein (214aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3400_2
R_OD1_Falkowbacteria_42_9, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

995..2089
DNA (1095bp) protein (365aa)
mtnA; methylthioribose-1-phosphate isomerase; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_42_9_curated
Methylthioribose-1-phosphate isomerase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I100_CALAS
mtnA; methylthioribose-1-phosphate isomerase
rifcsphigho2_02_scaffold_3400_3
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists

2067..2675
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YRB7_LYNSP
class II aldolase/adducin family protein Tax=AR19
class II aldolase/adducin family protein
rifcsphigho2_02_scaffold_3400_4

Not on your lists


2741..3277
DNA (537bp) protein (179aa)
30S ribosomal protein S19e {ECO:0000256|HAMAP-Rule:MF_01474}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
30S ribosomal protein S19; K02966 small subunit ribosomal protein S19e id=5049179 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rps19e; 30S ribosomal protein S19e
rifcsphigho2_02_scaffold_3400_5
AR6, Pacearchaeaota, DPANN, Archaea

Not on your lists

3270..3566
DNA (297bp) protein (99aa)
DNA-binding protein Metli_1804 n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1ART6_9EURY
DNA-binding protein; K06875 programmed cell death protein 5 Tax=AR6
hypothetical protein
rifcsphigho2_02_scaffold_3400_6
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

3568..3741
DNA (174bp) protein (58aa)
hypothetical protein
id=5800694 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR15
rifcsphigho2_02_scaffold_3400_7
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

3743..4282
DNA (540bp) protein (180aa)
50S ribosomal protein L31e Tax=AR11
RPL31A; 50S ribosomal protein L31; K02910 large subunit ribosomal protein L31e id=5049181 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal protein L31e
rifcsphigho2_02_scaffold_3400_8
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4341..5636
DNA (1296bp) protein (432aa)
Glutamate dehydrogenase n=5 Tax=Legionella pneumophila RepID=Q5X2P3_LEGPA
gdhA; hypothetical protein
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=446 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila.;
rifcsphigho2_02_scaffold_3400_9
unknown

Not on your lists

comp(5638..6300)
DNA (663bp) protein (221aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3400_10
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

6360..6971
DNA (612bp) protein (204aa)
DNA-(apurinic or apyrimidinic site) lyase; K10773 endonuclease III [EC:4.2.99.18] Tax=CG_Pacearch_03
Base excision DNA repair protein, HhH-GPD family n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IE81_ACIB4 id=5103570 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Base excision DNA repair protein, HhH-GPD family
rifcsphigho2_02_scaffold_3400_11
unknown

Not on your lists

comp(6974..8254)
DNA (1281bp) protein (427aa)
seg id=5100115 bin=WS6_GWC1_33_20 species=WS6_GWC1_33_22 genus=WS6_GWC1_33_22 taxon_order=WS6_GWC1_33_22 taxon_class=WS6_GWC1_33_22 phylum=WS6 tax=WS6_GWC1_33_20 organism_group=WS6 (Doikabacteria)
rifcsphigho2_02_scaffold_3400_12
R_OD1_Falkowbacteria_39_33, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8294..10045)
DNA (1752bp) protein (584aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI000368B924
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Falkowbacteria_39_33_curated
rifcsphigho2_02_scaffold_3400_13
unknown

Not on your lists

10142..10609
DNA (468bp) protein (156aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3400_14
R_OD1_57_28, Parcubacteria, Bacteria

Not on your lists

10705..12234
DNA (1530bp) protein (510aa)
GMP synthase, large subunit; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RIFCSPHIGHO2_01_FULL_OD1_57_28_curated
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Aquifex aeolicus (strain VF5) RepID=GUAA_AQUAE
rifcsphigho2_02_scaffold_3400_15
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists


12274..13551
DNA (1278bp) protein (426aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVR1_9BACT
rifcsphigho2_02_scaffold_3400_16
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(13532..14425)
DNA (894bp) protein (298aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=CG_Woesearch_03
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase id=5799823 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_3400_17
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

Not on your lists

comp(14469..15146)
DNA (678bp) protein (226aa)
Glycosyltransferases involved in cell wall biogenesis id=2845440 bin=GWC2_OP3_44_8 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
Glycosyltransferase Tax=GWB2_Planctomycetes_41_19_curated
family 2 glycosyl transferase
rifcsphigho2_02_scaffold_3400_18
unknown

Not on your lists

15230..15445
DNA (216bp) protein (72aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3400_19
unknown

Not on your lists

15581..16024
DNA (444bp) protein (148aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3400_20

Not on your lists

16081..16776
DNA (696bp) protein (232aa)
methylthioadenosine phosphorylase (EC:2.4.2.28)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JB15_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:CBH39295.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rifcsphigho2_02_scaffold_3400_21

Not on your lists

16778..18028
DNA (1251bp) protein (417aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000256|HAMAP-Rule:MF_01281};; EC
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=uncultured archaeon GZfos9E5 RepID=Q647P9_9ARCH rbh
amidohydrolase
rifcsphigho2_02_scaffold_3400_22
Fusobacterium gonidiaformans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(18033..18548)
DNA (516bp) protein (172aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EFS21518.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EFS21518.1};; TaxID=469605 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusoba
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Fusobacterium gonidiaformans ATCC 25563 RepID=E5C0C7_9FUSO
rifcsphigho2_02_scaffold_3400_23
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists


18664..20337
DNA (1674bp) protein (558aa)
argS; arginyl-tRNA synthetase; K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=AR19
Arginine--tRNA ligase id=5800697 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
arginyl-tRNA synthetase
rifcsphigho2_02_scaffold_3400_24

Not on your lists

20374..21615
DNA (1242bp) protein (414aa)
hypothetical protein id=5045990 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO45800.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
rifcsphigho2_02_scaffold_3400_25
unknown

Not on your lists

21644..21910
DNA (267bp) protein (89aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3400_26
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21852..22700
DNA (849bp) protein (283aa)
Fructose-bisphosphate aldolase n=2 Tax=Burkholderia RepID=E8YQ32_9BURK
fructose-bisphosphate aldolase, class I
Fructose-bisphosphate aldolase, class I {ECO:0000313|EMBL:AFT87677.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="B
Displaying 27 items

View Taxonomy