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rifcsphigho2_02_scaffold_2489

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_2489_1
unknown

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3..137
DNA (135bp) protein (45aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2489_2
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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192..974
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3JI02_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN61426.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
putative dienelactone hydrolase family
rifcsphigho2_02_scaffold_2489_3
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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1015..2763
DNA (1749bp) protein (583aa)
hypothetical protein; K10747 DNA ligase 1 [EC:6.5.1.1] Tax=RBG_13_Woesearchaeota_36_6_curated
DNA ligase id=5800225 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP-dependent DNA ligase
rifcsphigho2_02_scaffold_2489_4
GWC2_OD1-i_45_10, Moranbacteria, Parcubacteria, Bacteria

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comp(2760..3152)
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT86894.1}; TaxID=1618700 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_45_10.;"
hypothetical protein id=14632558 bin=bin9_gal15 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=bin9_gal15 organism_group=GAL15
rifcsphigho2_02_scaffold_2489_5
AR15, Woesearchaeaota, DPANN, Archaea

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3318..3773
DNA (456bp) protein (152aa)
30S ribosomal protein S15/S13e id=5799745 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S15/S13e Tax=AR15
30S ribosomal protein S15/S13e
rifcsphigho2_02_scaffold_2489_6
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3779..4801)
DNA (1023bp) protein (341aa)
Polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=CG_Woesearch_02
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZJW4_9BACT
Polyprenyl synthetase
rifcsphigho2_02_scaffold_2489_7
RIFOXYD2_FULL_Elusimicrobia_34_30_curated, Elusimicrobia, Bacteria

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comp(4798..5592)
DNA (795bp) protein (265aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase ; K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] Tax=RIFOXYD2_FULL_Elusimicrobia_34_30_curated
ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Clostridium ultunense Esp RepID=M1ZIU9_9CLOT
rifcsphigho2_02_scaffold_2489_8
R_RIF_OD1_11_46_22b, RIF-OD1-11, Parcubacteria, Bacteria

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comp(5624..6964)
DNA (1341bp) protein (447aa)
phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_46_22b_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FKP8_9BACT
putative phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_2489_9
unknown

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comp(7017..7877)
DNA (861bp) protein (287aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2489_10
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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7944..8699
DNA (756bp) protein (252aa)
NEQ098 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=Q74MK1_NANEQ id=5102985 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
transcriptional regulator TrmB Tax=RBG_16_Micrarchaeota_49_10_curated
hypothetical protein
rifcsphigho2_02_scaffold_2489_11

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comp(8692..9084)
DNA (393bp) protein (131aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
id=5044417 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
rifcsphigho2_02_scaffold_2489_12
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(9081..9326)
DNA (246bp) protein (82aa)
alias=gwa2_scaffold_521_157 Tax=CG_Pacearch_05
alias=gwa2_scaffold_521_157 id=18248350 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rifcsphigho2_02_scaffold_2489_13
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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comp(9359..10522)
DNA (1164bp) protein (388aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60 4.6.1.12); K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] id=5090670 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
ispD; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein (EC:4.6.1.12)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000313|EMBL:KKR78760.1}; Flags: Fragment;; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacte
rifcsphigho2_02_scaffold_2489_14
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

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comp(10569..11693)
DNA (1125bp) protein (375aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RBG_16_Spirochaetes_49_21_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ATZ4_9CLOT
rifcsphigho2_02_scaffold_2489_15
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11687..13555)
DNA (1869bp) protein (623aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W0Y1_DESAS
deoxyxylulose-5-phosphate synthase
rifcsphigho2_02_scaffold_2489_16
CG_Woesearch_02, Woesearchaeota, Archaea

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13603..14250
DNA (648bp) protein (216aa)
transglutaminase domain-containing protein Tax=CG_Woesearch_02
transglutaminase domain-containing protein id=5044916 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_2489_17

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14348..15040
DNA (693bp) protein (231aa)
rpl1P; 50S ribosomal protein L1P; K02863 large subunit ribosomal protein L1 id=5049223 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L1 {ECO:0000313|EMBL:KHO45214.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L1
rifcsphigho2_02_scaffold_2489_18

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15060..15905
DNA (846bp) protein (282aa)
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rplP0; acidic ribosomal protein P0; K02864 large subunit ribosomal protein L10 id=5047525 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
acidic ribosomal protein P0 RplPO
rifcsphigho2_02_scaffold_2489_19
AR4, Woesearchaeaota, DPANN, Archaea

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15936..16247
DNA (312bp) protein (104aa)
50S ribosomal protein L12 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WM01_9EURY
50S ribosomal protein L12; K02869 large subunit ribosomal protein L12 Tax=AR4
50S ribosomal protein L12
rifcsphigho2_02_scaffold_2489_20
CG_Woesearch_02, Woesearchaeota, Archaea

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16279..17175
DNA (897bp) protein (299aa)
phosphoserine phosphatase serb (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3] Tax=CG_Woesearch_02
hypothetical protein id=5047527 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_2489_21
unknown

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17199..17456
DNA (258bp) protein (86aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2489_22
R_RIF_OD1_06_39_25, RIF-OD1-6, Parcubacteria, Bacteria

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17568..22457
DNA (4890bp) protein (1630aa)
PKD domain containing protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_06_39_25_curated
hypothetical protein id=4605342 bin=GWA2_Ignavibacteria_55_11 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
rifcsphigho2_02_scaffold_2489_23

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comp(22460..23158)
DNA (699bp) protein (233aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT53665.1}; TaxID=1618930 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_44_22.;"
Putative DNA alkylation repair enzyme id=3094874 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
DNA alkylation repair enzyme
rifcsphigho2_02_scaffold_2489_24

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23209..23607
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2GDG7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE21115.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
FAD synthetase
rifcsphigho2_02_scaffold_2489_25
unknown

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comp(23608..24327)
DNA (720bp) protein (240aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2489_26
Thermococcus cleftensis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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24420..25160
DNA (741bp) protein (247aa)
Putative biotin biosynthesis protein BioY n=1 Tax=Thermococcus sp. CL1 RepID=I3ZW10_9EURY
putative biotin biosynthesis protein BioY
Putative biotin biosynthesis protein BioY {ECO:0000313|EMBL:AFL95894.1}; TaxID=163003 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcu
rifcsphigho2_02_scaffold_2489_27
R_OD1_Wolfebacteria_47_17b, Wolfebacteria, Parcubacteria, Bacteria

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25190..25849
DNA (660bp) protein (220aa)
Thiol-disulfide isomerase n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ASR9_9ARCH
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_47_17b_curated
thiol-disulfide isomerase
rifcsphigho2_02_scaffold_2489_28
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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25846..26541
DNA (696bp) protein (232aa)
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NN09_9FIRM
cbiO2; cobalt transporter ATP-binding subunit
Tax=BJP_IG2069_Syntrophobacterales_46_30
rifcsphigho2_02_scaffold_2489_29
Bacillus pseudofirmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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26531..26743
DNA (213bp) protein (71aa)
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000255|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000255|HAMAP-Rule:MF_01461};; TaxID=398511 species="Bacter
Displaying 29 items

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