ggKbase home page

rifcsphigho2_02_scaffold_2246

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_2246_1
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(1..372)
DNA (372bp) protein (124aa)
hypothetical protein Tax=CG_Aenigma_01
hypothetical protein id=5802631 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
prophage antirepressor
rifcsphigho2_02_scaffold_2246_2
unknown

Not on your lists

comp(578..697)
DNA (120bp) protein (40aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2246_3
R_OD1_Falkowbacteria_46_11b, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(725..1414)
DNA (690bp) protein (230aa)
hypothetical protein; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPLOWO2_02_FULL_OD1_Falkowbacteria_46_11b_curated
Putative uridylate kinase n=1 Tax=delta proteobacterium NaphS2 RepID=D8F520_9DELT
uridylate kinase
rifcsphigho2_02_scaffold_2246_4

Not on your lists

comp(1424..1768)
DNA (345bp) protein (115aa)
hypothetical protein id=5048451 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45485.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_2246_5
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(1765..2142)
DNA (378bp) protein (126aa)
Putative uncharacterized protein Tax=AR11
hypothetical protein id=5047440 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_2246_6
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(2146..3930)
DNA (1785bp) protein (595aa)
secd/secf/secdf export membrane protein; K03072 preprotein translocase subunit SecD Tax=CG_Woesearch_02
hypothetical protein; K03072 preprotein translocase subunit SecD id=5047439 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
SecD/SecF/SecDF export membrane protein
rifcsphigho2_02_scaffold_2246_7
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(3914..4852)
DNA (939bp) protein (313aa)
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF Tax=CG_Woesearch_02
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=5048448 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein-export membrane protein SecF
rifcsphigho2_02_scaffold_2246_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

4965..5687
DNA (723bp) protein (241aa)
trab determinant protein Tax=CG_Woesearch_02
TraB family protein id=5041750 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
TraB family protein
rifcsphigho2_02_scaffold_2246_9
unknown

Not on your lists

comp(5821..6216)
DNA (396bp) protein (132aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2246_10
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(6310..7599)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9PAI9_CYAGP
hypothetical protein Tax=CG_Micra_05
hypothetical protein
rifcsphigho2_02_scaffold_2246_11
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

7972..8166
DNA (195bp) protein (65aa)
Integrase catalytic region id=5046599 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Integrase catalytic region Tax=AR4
rifcsphigho2_02_scaffold_2246_12
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

8226..8963
DNA (738bp) protein (246aa)
peptidase M50 Tax=CG_Woesearch_02
Peptidase M50 id=5041751 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
peptidase M50 family
rifcsphigho2_02_scaffold_2246_13
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

9011..9346
DNA (336bp) protein (112aa)
Marine sediment metagenome DNA, contig: S01H1_S02805 Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsphigho2_02_scaffold_2246_14
unknown

Not on your lists

comp(9376..10065)
DNA (690bp) protein (230aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2246_15
unknown

Not on your lists

comp(10104..10814)
DNA (711bp) protein (237aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2246_16
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(10816..12819)
DNA (2004bp) protein (668aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=667014 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriace
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADW7_THEID
PAS/PAC sensor signal transduction histidine kinase
rifcsphigho2_02_scaffold_2246_17
RIFOXYA2_FULL_Elusimicrobia_40_6_curated, Elusimicrobia, Bacteria

Not on your lists

12877..14055
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PA71_DEFDS
hypothetical protein Tax=RIFOXYA2_FULL_Elusimicrobia_40_6_curated
hypothetical protein
rifcsphigho2_02_scaffold_2246_18
R_SM2F11_46_11, SM2F11, Bacteria

Not on your lists

14245..14610
DNA (366bp) protein (122aa)
id=5040627 Tax=RIFCSPHIGHO2_02_FULL_SM2F11_46_11_curated
hypothetical protein id=120451 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
rifcsphigho2_02_scaffold_2246_19
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

14719..17649
DNA (2931bp) protein (977aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI00031F7A3C
putative transcriptional regulator Tax=RBG_13_Pacearchaeota_36_9_curated
transcriptional regulator
rifcsphigho2_02_scaffold_2246_20
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists

comp(17675..18907)
DNA (1233bp) protein (411aa)
pyridoxal phosphate-dependent acyltransferase (EC:2.3.1.29)
Putative uncharacterized protein n=1 Tax=uncultured candidate division JS1 bacterium RepID=G3BMQ3_9BACT rbh
class I and II aminotransferase Tax=RBG_19FT_COMBO_JS1_35_14_curated
rifcsphigho2_02_scaffold_2246_21
Flexistipes sinusarabici, Flexistipes, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

19006..20748
DNA (1743bp) protein (581aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AEI14084.1}; EC=6.2.1.3 {ECO:0000313|EMBL:AEI14084.1};; Flags: Precursor;; TaxID=717231 species="Bacteria; Deferribacteres; Deferribacterales; Defer
Long-chain-fatty-acid--CoA ligase n=1 Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E8W0_FLESM
rifcsphigho2_02_scaffold_2246_22
RifOxyC12_full_OD1_Magasanikbacteria_33_11_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(20776..21630)
DNA (855bp) protein (285aa)
Beta-ketoadipate enol-lactone hydrolase (EC:3.1.1.24)
Carboxylesterase (Est-1) n=1 Tax=uncultured bacterium RepID=K2DLB5_9BACT
est-1; carboxylesterase Tax=RifOxyC12_full_OD1_Magasanikbacteria_33_11_curated
rifcsphigho2_02_scaffold_2246_23

Not on your lists

21890..24175
DNA (2286bp) protein (762aa)
Fanconi anemia group M protein {ECO:0000313|EMBL:KHO51193.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Hef nuclease id=5800171 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DEAD/DEAH box helicase
rifcsphigho2_02_scaffold_2246_24
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(24250..25521)
DNA (1272bp) protein (424aa)
Uncharacterized protein {ECO:0000313|EMBL:AKB34309.1}; TaxID=1434119 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina s
rifcsphigho2_02_scaffold_2246_25
GWA2_Planctomycetes_40_7_curated, Planctomycetes, Bacteria

Not on your lists

comp(25563..26942)
DNA (1380bp) protein (460aa)
Hypothetical secreted protein, NosD and DUF11 family id=3297565 bin=GWA2_Planctomycetia_40_7 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
Hypothetical secreted protein, NosD and DUF11 family Tax=GWA2_Planctomycetes_40_7_curated
rifcsphigho2_02_scaffold_2246_26

Not on your lists

comp(27232..28092)
DNA (861bp) protein (287aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Protease HtpX homolog id=5799559 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
protease
Displaying 26 items

View Taxonomy