ggKbase home page

rifcsphigho2_02_scaffold_5363

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5363_1
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2..1603)
-----------------
DNA (1602bp)
protein (534aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000375783B
hypothetical protein
Tax=AR17
rifcsphigho2_02_scaffold_5363_2
unknown

Not on your lists

comp(1864..2310)
-----------------
DNA (447bp)
protein (149aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5363_3
unknown

Not on your lists

comp(2362..2952)
-----------------
DNA (591bp)
protein (197aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5363_4
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2942..3811)
-----------------
DNA (870bp)
protein (290aa)
Tax=AR17
rifcsphigho2_02_scaffold_5363_5
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3862..4722
-----------------
DNA (861bp)
protein (287aa)
Uncharacterized protein n=1 Tax=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) RepID=A7FNG4_YERP3
dienelactone hydrolase-like protein Tax=RifOxyA12_full_Deltaproteobacteria_61_11_curated
hypothetical protein
rifcsphigho2_02_scaffold_5363_6
unknown

Not on your lists

4758..4991
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5363_7
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(4988..5467)
-----------------
DNA (480bp)
protein (160aa)
Tax=AR17
rifcsphigho2_02_scaffold_5363_8

Not on your lists

comp(5460..5855)
-----------------
DNA (396bp)
protein (132aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
VapC-type toxin; K07062 id=5045342 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
putative nucleic acid-binding protein, containsPIN domain
rifcsphigho2_02_scaffold_5363_9
unknown

Not on your lists

comp(5825..6055)
-----------------
DNA (231bp)
protein (77aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5363_10

Not on your lists

comp(6172..9450)
-----------------
DNA (3279bp)
protein (1093aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO52495.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
id=5049521 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_5363_11
AR1, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(9558..9851)
-----------------
DNA (294bp)
protein (98aa)
Tax=AR1
rifcsphigho2_02_scaffold_5363_12
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9944..10282)
-----------------
DNA (339bp)
protein (113aa)
Transcription regulator AbrB/SpoV, predicted id=5041830 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR9
rifcsphigho2_02_scaffold_5363_13

Not on your lists

comp(10279..10446)
-----------------
DNA (168bp)
protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50078.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rifcsphigho2_02_scaffold_5363_14
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10409..11194)
-----------------
DNA (786bp)
protein (262aa)
hypothetical protein
id=5103336 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR17
rifcsphigho2_02_scaffold_5363_15
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(11270..12511)
-----------------
DNA (1242bp)
protein (414aa)
Uncharacterized protein n=1 Tax=Ferroplasma sp. Type II RepID=T0M9U7_9EURY
putative ATPase (AAA+ superfamily) Tax=CG_Micra_05
putative ATPase (AAA+ superfamily)
rifcsphigho2_02_scaffold_5363_16
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12625..15768)
-----------------
DNA (3144bp)
protein (1048aa)
id=5049521 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR17
rifcsphigho2_02_scaffold_5363_17
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

15893..16390
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein id=5049517 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein Tax=AR18
rifcsphigho2_02_scaffold_5363_18
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

16390..16797
-----------------
DNA (408bp)
protein (136aa)
id=5049518 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR17
rifcsphigho2_02_scaffold_5363_19
AR6, Pacearchaeaota, DPANN, Archaea

Not on your lists

16794..18080
-----------------
DNA (1287bp)
protein (429aa)
Amino acid permease n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUD9_METCG id=5103485 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Amino acid/polyamine/organocation transporter, APC superfamily Tax=AR6
Amino acid permease
rifcsphigho2_02_scaffold_5363_20
unknown

Not on your lists

comp(18326..19081)
-----------------
DNA (756bp)
protein (252aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B7809
DNA polymerase sliding clamp n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGT4_9EURY Tax=AR20
DNA polymerase sliding clamp
rifcsphigho2_02_scaffold_5363_21
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(19286..19528)
-----------------
DNA (243bp)
protein (81aa)
tfs_rpoM; transcription elongation factor TFS/RNA polymerase subunit M; K03057 transcription elongation factor Tax=AR17
rifcsphigho2_02_scaffold_5363_22

Not on your lists

comp(19684..20244)
-----------------
DNA (561bp)
protein (187aa)
Marine sediment metagenome DNA, contig: S12H4_L00950 {ECO:0000313|EMBL:GAI82642.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
id=5103328 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_02_scaffold_5363_23

Not on your lists

comp(20287..20559)
-----------------
DNA (273bp)
protein (91aa)
DNA-directed RNA polymerase subunit L {ECO:0000256|HAMAP-Rule:MF_00261}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00261};; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
DNA-directed RNA polymerase subunit L id=5799914 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit L
rifcsphigho2_02_scaffold_5363_24

Not on your lists

comp(20768..21109)
-----------------
DNA (342bp)
protein (114aa)
Peptidyl-tRNA hydrolase, PTH2 family {ECO:0000313|EMBL:KHO50116.1}; EC=3.1.1.29 {ECO:0000313|EMBL:KHO50116.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
Peptidyl-tRNA hydrolase id=5799736 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Peptidyl-tRNA hydrolase
rifcsphigho2_02_scaffold_5363_25
unknown

Not on your lists

21187..21693
-----------------
DNA (507bp)
protein (169aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036C6F0E
rifcsphigho2_02_scaffold_5363_26

Not on your lists

comp(21709..22416)
-----------------
DNA (708bp)
protein (236aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003650638
Phosphoesterase {ECO:0000313|EMBL:AJF61960.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
phosphoesterase
rifcsphigho2_02_scaffold_5363_27
unknown

Not on your lists

comp(22478..22999)
-----------------
DNA (522bp)
protein (174aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5363_28
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(23034..27032)
-----------------
DNA (3999bp)
protein (1333aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] id=5049679 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=AR18
DEAD/H associated protein
rifcsphigho2_02_scaffold_5363_29

Not on your lists

27206..27961
-----------------
DNA (756bp)
protein (252aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO45755.1}; TaxID=1579364 species="Archaea.;" source="archaeon GW2011_AR1.;"
zinc/iron permease id=5094582 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
zinc/iron permease
rifcsphigho2_02_scaffold_5363_30
unknown

Not on your lists

27993..28163
-----------------
DNA (171bp)
protein (57aa)

This feature has no annotations

Displaying items 1-30 of 56 in total

View Taxonomy