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rifcsphigho2_02_scaffold_1389

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_1389_1
unknown

Not on your lists

261..542
-----------------
DNA (282bp)
protein (94aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_2
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(804..1586)
-----------------
DNA (783bp)
protein (261aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035CCE42
xylose isomerase
rifcsphigho2_02_scaffold_1389_3
unknown

Not on your lists

comp(1758..2168)
-----------------
DNA (411bp)
protein (137aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_4

Not on your lists

2435..3241
-----------------
DNA (807bp)
protein (269aa)
ATP-dependent Clp protease ATP-binding subunit ClpC n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IBA9_PHYMF
clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
rifcsphigho2_02_scaffold_1389_5
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(3252..4394)
-----------------
DNA (1143bp)
protein (381aa)
UPF0095 protein Arcve_0273 id=5799947 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_1389_6
unknown

Not on your lists

comp(4508..4792)
-----------------
DNA (285bp)
protein (95aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_7
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists

5004..6692
-----------------
DNA (1689bp)
protein (563aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035CC481
rifcsphigho2_02_scaffold_1389_8
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

comp(6689..7264)
-----------------
DNA (576bp)
protein (192aa)
hypothetical protein n=1 Tax=Bacteroides propionicifaciens RepID=UPI00036780C0
Integrase
rifcsphigho2_02_scaffold_1389_9
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7313..7831
-----------------
DNA (519bp)
protein (173aa)
Bifunctional deaminase-reductase domain protein n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J4J8_NOSP7
deaminase-reductase domain-containing protein
rifcsphigho2_02_scaffold_1389_10
unknown

Not on your lists

comp(8021..8350)
-----------------
DNA (330bp)
protein (110aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_11
unknown

Not on your lists

8611..8820
-----------------
DNA (210bp)
protein (70aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_12
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

8804..9529
-----------------
DNA (726bp)
protein (242aa)
rifcsphigho2_02_scaffold_1389_13

Not on your lists

9723..10064
-----------------
DNA (342bp)
protein (114aa)
rifcsphigho2_02_scaffold_1389_14
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

10110..10250
-----------------
DNA (141bp)
protein (47aa)
rifcsphigho2_02_scaffold_1389_15
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


10652..11632
-----------------
DNA (981bp)
protein (327aa)
ASCG--tRNA--N6-adenosine--threonylcarbamoyltransferase
Probable tRNA threonylcarbamoyladenosine biosynthesis protein KAE1 homolog id=5800645 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
protein kinase
rifcsphigho2_02_scaffold_1389_16
unknown

Not on your lists

comp(11839..12057)
-----------------
DNA (219bp)
protein (73aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_17
unknown

Not on your lists

comp(12047..12259)
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_18

Not on your lists

comp(12256..15426)
-----------------
DNA (3171bp)
protein (1057aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D1L1_9ARCH
type II restriction enzyme, methylase subunit
rifcsphigho2_02_scaffold_1389_19
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists


15556..15780
-----------------
DNA (225bp)
protein (75aa)
ASCG--Ribosomal--protein--L7Ae--L8e
50S ribosomal protein L7Ae id=5800777 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl7ae; 50S ribosomal protein L7Ae
rifcsphigho2_02_scaffold_1389_20
unknown

Not on your lists

15782..15967
-----------------
DNA (186bp)
protein (62aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_21
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists


16012..16335
-----------------
DNA (324bp)
protein (108aa)
ASCG--Ribosomal--protein--S28e
30S ribosomal protein S28e n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=RS28_AERPE id=5103742 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S28e
rifcsphigho2_02_scaffold_1389_22
unknown

Not on your lists

16337..16609
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_23
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


16606..16806
-----------------
DNA (201bp)
protein (67aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI0003810CCB
50S ribosomal protein L24
rifcsphigho2_02_scaffold_1389_24
unknown

Not on your lists

16850..17092
-----------------
DNA (243bp)
protein (81aa)
rifcsphigho2_02_scaffold_1389_25
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

17092..17496
-----------------
DNA (405bp)
protein (135aa)
Uncharacterized protein n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZLV5_THELI
hypothetical protein
rifcsphigho2_02_scaffold_1389_26
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

17642..19549
-----------------
DNA (1908bp)
protein (636aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PUB6_METMA
rifcsphigho2_02_scaffold_1389_27
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

19551..19919
-----------------
DNA (369bp)
protein (123aa)
cupin id=5095302 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
cupin
rifcsphigho2_02_scaffold_1389_28
unknown

Not on your lists

19916..20041
-----------------
DNA (126bp)
protein (42aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1389_29
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


20038..22572
-----------------
DNA (2535bp)
protein (845aa)
BSCG--gyrA
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A id=5800238 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_1389_30
unknown

Not on your lists

comp(22579..23028)
-----------------
DNA (450bp)
protein (150aa)

This feature has no annotations

Displaying items 1-30 of 68 in total

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