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rifcsphigho2_02_scaffold_5520

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5520_1
unknown

Not on your lists

comp(3..182)
DNA (180bp) protein (60aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5520_2
unknown

Not on your lists

404..634
DNA (231bp) protein (77aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5520_3
CG_Pacearch_05, Pacearchaeota, Archaea

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600..992
DNA (393bp) protein (131aa)
PIN domain-containing protein Tax=CG_Pacearch_05
Putative PIN domain protein id=4379347 bin=PER_GWC2_41_7 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
PIN protein
rifcsphigho2_02_scaffold_5520_4
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(996..1337)
DNA (342bp) protein (114aa)
hypothetical protein
RNA polymerase II, Rpb4 Tax=CG_Woesearch_02
RNA polymerase II, Rpb4 id=5799707 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_5520_5
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(1318..1629)
DNA (312bp) protein (104aa)
50S ribosomal protein L21; K02889 large subunit ribosomal protein L21e Tax=CG_Woesearch_02
50S ribosomal protein L21e; K02889 large subunit ribosomal protein L21e id=5051516 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L21e
rifcsphigho2_02_scaffold_5520_6
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(1684..2097)
DNA (414bp) protein (138aa)
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsphigho2_02_scaffold_5520_7
unknown

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2165..2395
DNA (231bp) protein (77aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5520_8
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

2688..3722
DNA (1035bp) protein (345aa)
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
rifcsphigho2_02_scaffold_5520_9
unknown

Not on your lists

3746..6823
DNA (3078bp) protein (1026aa)
Isoleucine--tRNA ligase n=2 Tax=Dictyoglomus RepID=B5YF35_DICT6 id=5103221 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Isoleucine--tRNA ligase n=2 Tax=Dictyoglomus RepID=B5YF35_DICT6 Tax=AR20
Isoleucine-tRNA ligase
rifcsphigho2_02_scaffold_5520_10

Not on your lists

comp(6910..7845)
DNA (936bp) protein (312aa)
seg id=5043636 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46612.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_5520_11

Not on your lists

comp(7842..8768)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BK77_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD69093.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
rifcsphigho2_02_scaffold_5520_12
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(8835..9722)
DNA (888bp) protein (296aa)
putative agmatinase; K01480 agmatinase [EC:3.5.3.11] Tax=RBG_13_Chloroflexi_54_9_curated
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFC6_9BACT
putative agmatinase
rifcsphigho2_02_scaffold_5520_13
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(9771..10208)
DNA (438bp) protein (146aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E0V2_DICTD
S-adenosylmethionine decarboxylase
rifcsphigho2_02_scaffold_5520_14

Not on your lists

comp(10431..11345)
DNA (915bp) protein (305aa)
deoxyhypusine synthase (EC:2.5.1.46)
deoxyhypusine synthase (EC:2.5.1.46); K00809 deoxyhypusine synthase [EC:2.5.1.46] id=5240806 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Deoxyhypusine synthase {ECO:0000313|EMBL:AJF59798.1}; EC=2.5.1.46 {ECO:0000313|EMBL:AJF59798.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_5520_15

Not on your lists

11503..12543
DNA (1041bp) protein (347aa)
Geranylgeranyl diphosphate synthase, type I {ECO:0000313|EMBL:KHO55006.1}; EC=2.5.1.1 {ECO:0000313|EMBL:KHO55006.1};; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
geranylgeranyl diphosphate synthase, type I (EC:2.5.1.1)
polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] id=5241589 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_5520_16

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comp(12540..13235)
DNA (696bp) protein (232aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K15888 tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] id=5048456 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.89 {ECO:0000256|HAMAP-Rule:MF_01139};; Undecaprenyl diphosphate synt
Tritrans,polycis-undecaprenyl-diphosphate synthase, geranylgeranyl-diphosphate specific
rifcsphigho2_02_scaffold_5520_17
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13458..14099
DNA (642bp) protein (214aa)
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1053247 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Ba
Ribulose-phosphate 3-epimerase n=3 Tax=Bacillus cereus RepID=J8BC45_BACCE
rifcsphigho2_02_scaffold_5520_18
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(14231..14461)
DNA (231bp) protein (77aa)
Putative uncharacterized protein id=5799866 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Putative uncharacterized protein Tax=AR15
hypothetical protein
rifcsphigho2_02_scaffold_5520_19
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(14569..15045)
DNA (477bp) protein (159aa)
hypothetical protein
seg Tax=CG_Woesearch_02
seg id=5041657 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_5520_20
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

15281..16360
DNA (1080bp) protein (360aa)
peptidase M20; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] Tax=RBG_13_Woesearchaeota_36_6_curated
Peptidase M20 id=1972577 bin=GWE2_CPR3_35_7 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
peptidase M20
rifcsphigho2_02_scaffold_5520_21
unknown

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comp(16362..16613)
DNA (252bp) protein (84aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5520_22
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(16852..17046)
DNA (195bp) protein (65aa)
Tax=CG_Woesearch_03
rifcsphigho2_02_scaffold_5520_23
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(17098..17532)
DNA (435bp) protein (145aa)
Ribonuclease VapC n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RZM8_FERPA
putative nucleic acid-binding protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsphigho2_02_scaffold_5520_24
unknown

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comp(17510..17677)
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying 24 items

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