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rifcsphigho2_02_scaffold_4674

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_4674_1

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comp(2..343)
-----------------
DNA (342bp)
protein (114aa)
Marine sediment metagenome DNA, contig: S01H4_L01416 {ECO:0000313|EMBL:GAG54531.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_02_scaffold_4674_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(366..677)
-----------------
DNA (312bp)
protein (104aa)
transcriptional regulator PadR family transcriptional regulator Tax=RBG_13_Bathyarchaeota_38_9_curated
Transcriptional regulator PadR family protein id=5800323 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
transcriptional regulator PadR family transcriptional regulator
rifcsphigho2_02_scaffold_4674_3
AR15, Woesearchaeaota, DPANN, Archaea

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826..996
-----------------
DNA (171bp)
protein (57aa)
seg id=5800322 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
seg Tax=AR15
rifcsphigho2_02_scaffold_4674_4
AR5, Aenigmarchaeota, DPANN, Archaea

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1051..1611
-----------------
DNA (561bp)
protein (187aa)
hypothetical protein id=18248170 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein Tax=AR5
hypothetical protein
rifcsphigho2_02_scaffold_4674_5
AR18, Woesearchaeaota, DPANN, Archaea

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1712..2272
-----------------
DNA (561bp)
protein (187aa)
segregation and condensation protein B; K06024 segregation and condensation protein B id=5044965 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
segregation and condensation protein B; K06024 segregation and condensation protein B Tax=AR18
Segregation and condensation protein B
rifcsphigho2_02_scaffold_4674_6

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2262..3716
-----------------
DNA (1455bp)
protein (485aa)
hypothetical protein
id=5103316 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62597.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_02_scaffold_4674_7

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3664..5103
-----------------
DNA (1440bp)
protein (480aa)
hypothetical protein
id=5103317 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62598.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_02_scaffold_4674_8

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5120..6364
-----------------
DNA (1245bp)
protein (415aa)
Glycosyl transferase {ECO:0000313|EMBL:KHO49777.1}; TaxID=1579368 species="Archaea.;" source="archaeon GW2011_AR6.;"
putative bi-functional transferase/deacetylase id=5044969 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Glycosyltransferase involved in cell wall biogenesis
rifcsphigho2_02_scaffold_4674_9

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6366..7037
-----------------
DNA (672bp)
protein (224aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG11109.1}; TaxID=717931 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
id=5044968 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_4674_10
unknown

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7050..8411
-----------------
DNA (1362bp)
protein (454aa)
Putative uncharacterized protein n=5 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AAF4_9EURY id=5103320 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein n=5 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AAF4_9EURY Tax=AR20
hypothetical protein
rifcsphigho2_02_scaffold_4674_11
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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8574..9068
-----------------
DNA (495bp)
protein (165aa)
Putative transcription factor, MBF1 like protein n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HQL5_ACIS0 id=5103321 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein; K03627 putative transcription factor Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein
rifcsphigho2_02_scaffold_4674_12
AR18, Woesearchaeaota, DPANN, Archaea

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9040..9642
-----------------
DNA (603bp)
protein (201aa)
RNA methylase; K07579 putative methylase id=5044974 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
RNA methylase; K07579 putative methylase Tax=AR18
methyltransferase related protein
rifcsphigho2_02_scaffold_4674_13

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9668..9940
-----------------
DNA (273bp)
protein (91aa)
DNA-directed RNA polymerase subunit L {ECO:0000256|HAMAP-Rule:MF_00261}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00261};; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
DNA-directed RNA polymerase subunit L n=2 Tax=Methanobacterium RepID=K6SZJ9_9EURY id=5103326 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit L
rifcsphigho2_02_scaffold_4674_14
AR20, Woesearchaeaota, DPANN, Archaea

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10018..10761
-----------------
DNA (744bp)
protein (248aa)
hypothetical protein
id=5103327 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_02_scaffold_4674_15
CG_Woesearch_02, Woesearchaeota, Archaea

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10819..11427
-----------------
DNA (609bp)
protein (203aa)
peptidase S26B, signal peptidase; K13280 signal peptidase, endoplasmic reticulum-type [EC:3.4.-.-] Tax=CG_Woesearch_02
hypothetical protein
id=5103328 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_02_scaffold_4674_16

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comp(11361..11987)
-----------------
DNA (627bp)
protein (209aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000371D3FE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62567.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_02_scaffold_4674_17
unknown

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12033..12350
-----------------
DNA (318bp)
protein (106aa)
Transcription-associated protein TFIIS n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VZ68_9EURY id=5103330 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Transcription-associated protein TFIIS n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VZ68_9EURY Tax=AR20
Transcription-associated protein TFIIS
rifcsphigho2_02_scaffold_4674_18
unknown

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12320..12664
-----------------
DNA (345bp)
protein (115aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4674_19

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12729..13469
-----------------
DNA (741bp)
protein (247aa)
DNA polymerase sliding clamp n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGT4_9EURY id=5103332 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA polymerase sliding clamp
DNA polymerase sliding clamp {ECO:0000256|HAMAP-Rule:MF_00317, ECO:0000256|RuleBase:RU003673}; Proliferating cell nuclear antigen homolog {ECO:0000256|HAMAP-Rule:MF_00317}; TaxID=1579378 species="Arch
rifcsphigho2_02_scaffold_4674_20
unknown

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13527..14744
-----------------
DNA (1218bp)
protein (406aa)
Amino acid permease n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUD9_METCG id=5103485 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Amino acid permease n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUD9_METCG Tax=AR20
Amino acid permease
rifcsphigho2_02_scaffold_4674_21
AR9, Woesearchaeaota, DPANN, Archaea

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14741..15238
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein Tax=AR9
"Winged helix" DNA-binding domain id=5800418 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
MarR family regulator
rifcsphigho2_02_scaffold_4674_22

Not on your lists

15307..16026
-----------------
DNA (720bp)
protein (240aa)
hypothetical protein
id=5045883 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46228.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_4674_23
unknown

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16001..16249
-----------------
DNA (249bp)
protein (83aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4674_24
AR20, Woesearchaeaota, DPANN, Archaea

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16358..16870
-----------------
DNA (513bp)
protein (171aa)
hypothetical protein
id=5103494 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_02_scaffold_4674_25
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

16886..17155
-----------------
DNA (270bp)
protein (90aa)
hypothetical protein
id=5103504 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_02_scaffold_4674_26
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

17159..17716
-----------------
DNA (558bp)
protein (186aa)
Uncharacterized protein id=5800409 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein Tax=AR15
hypothetical protein
rifcsphigho2_02_scaffold_4674_27
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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17718..17942
-----------------
DNA (225bp)
protein (75aa)
hypothetical protein
id=2898912 Tax=RBG_16_Micrarchaeota_49_10_curated
id=5103497 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_02_scaffold_4674_28
GWA1_OP11_45_10_partial, Microgenomates, Bacteria

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17947..18264
-----------------
DNA (318bp)
protein (106aa)
Tax=GWA1_OP11_45_10_partial
rifcsphigho2_02_scaffold_4674_29
AR9, Woesearchaeaota, DPANN, Archaea

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18438..19094
-----------------
DNA (657bp)
protein (219aa)
methyltransferase type 11; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=AR9
Methyltransferase type 11 n=2 Tax=Nitrosopumilus RepID=K0BBN7_9ARCH
type 11 methyltransferase
Displaying 29 items

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