ggKbase home page

rifcsphigho2_02_scaffold_26202

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_26202_1
unknown

Not on your lists

comp(3..104)
-----------------
DNA (102bp)
protein (34aa)

This feature has no annotations

rifcsphigho2_02_scaffold_26202_2

Not on your lists

188..1153
-----------------
DNA (966bp)
protein (322aa)
Ribokinase {ECO:0000313|EMBL:KHO49042.1}; EC=2.7.1.15 {ECO:0000313|EMBL:KHO49042.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
ribokinase (EC:2.7.1.15)
Carbohydrate kinase n=1 Tax=sediment metagenome RepID=D9PEX2_9ZZZZ
rifcsphigho2_02_scaffold_26202_3
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

1172..1975
-----------------
DNA (804bp)
protein (268aa)
fructose-1,6-bisphosphate aldolase, class II (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] Tax=AR9
fructose-1,6-bisphosphate aldolase, class II (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) RepID=A5IKE8_THEP1
rifcsphigho2_02_scaffold_26202_4
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

1987..2430
-----------------
DNA (444bp)
protein (148aa)
RpiB/LacA/LacB family sugar-phosphate isomerase; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=AR9
Ribose 5-phosphate isomerase id=2565851 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
hypothetical protein
rifcsphigho2_02_scaffold_26202_5
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

2435..3061
-----------------
DNA (627bp)
protein (209aa)
GA15886 gene product from transcript GA15886-RA; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=AR9
ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=5047354 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
rifcsphigho2_02_scaffold_26202_trna_1
unknown

Not on your lists

3196..3301
-----------------
DNA (106bp)
transferRNA
rifcsphigho2_02_scaffold_26202_6

Not on your lists

3277..3999
-----------------
DNA (723bp)
protein (241aa)
radC; DNA repair protein RadC; K03630 DNA repair protein RadC id=5044593 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA repair protein RadC {ECO:0000313|EMBL:KHO46327.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
radC; DNA repair protein RadC
rifcsphigho2_02_scaffold_26202_7
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

4051..4668
-----------------
DNA (618bp)
protein (206aa)
tRNA-splicing endonuclease subunit alpha; K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] Tax=RBG_13_Woesearchaeota_36_6_curated
tRNA-splicing endonuclease subunit alpha (EC:3.1.27.9); K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] id=5046344 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
tRNA-intron endonuclease
rifcsphigho2_02_scaffold_26202_8
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

4737..5819
-----------------
DNA (1083bp)
protein (361aa)
hypothetical protein
seg id=5041810 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
seg Tax=AR4
rifcsphigho2_02_scaffold_26202_9
unknown

Not on your lists

5825..6556
-----------------
DNA (732bp)
protein (244aa)

This feature has no annotations

rifcsphigho2_02_scaffold_26202_10

Not on your lists

6540..7580
-----------------
DNA (1041bp)
protein (347aa)
Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_00614}; Short=FEN-1 {ECO:0000256|HAMAP-Rule:MF_00614};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00614};; Flap structure-specific endonuclease 1 {ECO:000025
rad2; flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] id=5046346 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
flap endonuclease-1
rifcsphigho2_02_scaffold_26202_11
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

7584..8120
-----------------
DNA (537bp)
protein (179aa)
id=5045290 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR18
rifcsphigho2_02_scaffold_26202_12

Not on your lists

8151..9050
-----------------
DNA (900bp)
protein (300aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=5041808 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO50081.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
hypothetical protein
Displaying 13 items

View Taxonomy