ggKbase home page

RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_1
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

3..917
-----------------
DNA (915bp)
protein (305aa)
pilus retraction ATPase PilT; K02669 twitching motility protein PilT Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Pili biogenesis protein ATPase id=4219065 bin=GWF2_OP3_43_52 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
twitching motility protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_2
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

914..1417
-----------------
DNA (504bp)
protein (168aa)
3-isopropylmalate dehydratase, small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
3-isopropylmalate dehydratase small subunit id=2210441 bin=GWB2_CP_45_9 species=unknown genus=Aciduliprofundum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
3-isopropylmalate dehydratase, small subunit
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_3
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

1431..2513
-----------------
DNA (1083bp)
protein (361aa)
isocitrate dehydrogenase (NADP) (EC:1.1.1.41) Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
isocitrate dehydrogenase (NADP) (EC:1.1.1.41)
Isopropylmalate/isohomocitrate dehydrogenase family protein id=2210442 bin=GWB2_CP_45_9 species=unknown genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_4
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

2495..3418
-----------------
DNA (924bp)
protein (308aa)
malate dehydrogenase (NAD) (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
malate dehydrogenase (NAD) (EC:1.1.1.37)
Malate dehydrogenase id=2210443 bin=GWB2_CP_45_9 species=Methanohalobium evestigatum genus=Methanohalobium taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_5
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

3469..4755
-----------------
DNA (1287bp)
protein (429aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase id=3598883 bin=GWC2_OP3_44_8 species=Helcococcus kunzii genus=Helcococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_6
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

4803..5540
-----------------
DNA (738bp)
protein (246aa)
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-) Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-)
Octanoyltransferase id=3706739 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_7
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

5617..5856
-----------------
DNA (240bp)
protein (80aa)
biotin/lipoyl attachment domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Putative uncharacterized protein id=3706741 bin=GWF2_OP3_43_52 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
biotin/lipoyl attachment domain-containing protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_8
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

5872..6735
-----------------
DNA (864bp)
protein (288aa)
hypothetical protein LinasL1_02220 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
hypothetical protein LinasL1_02220 id=2210447 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_9
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

6951..7184
-----------------
DNA (234bp)
protein (78aa)
excisionase family DNA binding domain Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Excisionase/Xis, DNA-binding protein id=3692766 bin=GWC2_OP3_44_8 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
excisionase family DNA binding domain
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_10
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

7242..7868
-----------------
DNA (627bp)
protein (209aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
AMP-dependent synthetase and ligase id=3680236 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=Hydrogenobaculum taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
1-acyl-sn-glycerol-3-phosphate acyltransferase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_11
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

7861..9423
-----------------
DNA (1563bp)
protein (521aa)
shikimate/quinate 5-dehydrogenase Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Shikimate/quinate 5-dehydrogenase id=4808454 bin=GWC2_OP3-like_45_7 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
shikimate/quinate 5-dehydrogenase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_12
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

9423..11639
-----------------
DNA (2217bp)
protein (739aa)
signal transduction histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Signal transduction histidine kinase id=4808423 bin=GWC2_OP3-like_45_7 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
signal transduction histidine kinase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_13
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

11639..12016
-----------------
DNA (378bp)
protein (126aa)
Fis family two component sigma54 specific transcriptional regulator Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Response regulator receiver id=4808421 bin=GWC2_OP3-like_45_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
Fis family two component sigma54 specific transcriptional regulator
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_14
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

12025..13059
-----------------
DNA (1035bp)
protein (345aa)
Regulatory protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Regulatory protein id=4808419 bin=GWC2_OP3-like_45_7 species=Methylobacterium mesophilicum genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_15
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

13081..15264
-----------------
DNA (2184bp)
protein (728aa)
integral membrane sensor signal transduction histidine kinase; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_4
Signal transduction histidine kinase id=3692750 bin=GWC2_OP3_44_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_16
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

15308..15664
-----------------
DNA (357bp)
protein (119aa)
putative response regulator receiver protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=3706760 bin=GWF2_OP3_43_52 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
putative response regulator receiver protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_17
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

15676..16836
-----------------
DNA (1161bp)
protein (387aa)
metal dependent phosphohydrolase Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Hamp domain/gaf domain/hd domain protein id=3706764 bin=GWF2_OP3_43_52 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
metal dependent phosphohydrolase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_18
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

16841..17986
-----------------
DNA (1146bp)
protein (382aa)
monogalactosyldiacylglycerol synthase Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Diacylglycerol glucosyltransferase id=2254244 bin=GWB2_CP_45_9 species=uncultured bacterium CSLF42 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
monogalactosyldiacylglycerol synthase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_6942_19
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

18011..18379
-----------------
DNA (369bp)
protein (123aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Similar to lipid A biosynthesis lauroyl acyltransferase id=3690176 bin=GWC2_OP3_44_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
lipid A biosynthesis acyltransferase
Displaying 19 items

View Taxonomy