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RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_1
R_WOR_2_46_37, WOR-2, Bacteria

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comp(3..158)
-----------------
DNA (156bp)
protein (52aa)
Protein parD Tax=RIFCSPHIGHO2_02_FULL_WOR_2_46_37_curated
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_2
R_WOR_2_45_21, WOR-2, Bacteria

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comp(368..1447)
-----------------
DNA (1080bp)
protein (360aa)
histidinol-phosphate aminotransferase Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Histidinol-phosphate aminotransferase id=4113633 bin=GWF2_OP3_43_52 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
histidinol-phosphate aminotransferase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_3
R_WOR_2_45_21, WOR-2, Bacteria

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comp(1508..2569)
-----------------
DNA (1062bp)
protein (354aa)
pheA; bifunctional chorismate mutase/prephenate dihydratase (EC:4.2.1.51 5.4.99.5) Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
pheA; bifunctional chorismate mutase/prephenate dihydratase (EC:4.2.1.51 5.4.99.5)
Chorismate mutase id=4113634 bin=GWF2_OP3_43_52 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_4
R_WOR_2_45_21, WOR-2, Bacteria

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comp(2574..3215)
-----------------
DNA (642bp)
protein (214aa)
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Segregation and condensation protein B id=4113635 bin=GWF2_OP3_43_52 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
scpB; segregation and condensation protein B
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_5
R_WOR_2_45_21, WOR-2, Bacteria

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comp(3212..3847)
-----------------
DNA (636bp)
protein (212aa)
ruvA; holliday junction ATP-dependent DNA helicase RuvA Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Holliday junction ATP-dependent DNA helicase RuvA id=4113636 bin=GWF2_OP3_43_52 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
ruvA; holliday junction ATP-dependent DNA helicase RuvA
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_6
R_WOR_2_45_21, WOR-2, Bacteria

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comp(3825..4325)
-----------------
DNA (501bp)
protein (167aa)
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
ruvC; crossover junction endodeoxyribonuclease ruvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC id=2293996 bin=GWB2_CP_45_9 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_7
R_WOR_2_45_21, WOR-2, Bacteria

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comp(4336..5091)
-----------------
DNA (756bp)
protein (252aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Probable transcriptional regulatory protein NPH_1078 id=4113639 bin=GWF2_OP3_43_52 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_8
R_WOR_2_45_21, WOR-2, Bacteria

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comp(5530..5811)
-----------------
DNA (282bp)
protein (94aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CD94_DESTA
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_9
R_WOR_2_45_21, WOR-2, Bacteria

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comp(5801..6016)
-----------------
DNA (216bp)
protein (72aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ERY8_9BACT
hypothetical protein; K09803 hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_10
R_WOR_2_45_21, WOR-2, Bacteria

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comp(6124..7416)
-----------------
DNA (1293bp)
protein (431aa)
3-phosphoshikimate 1-carboxyvinyltransferase Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
3-phosphoshikimate 1-carboxyvinyltransferase id=4113643 bin=GWF2_OP3_43_52 species=Methanolobus psychrophilus genus=Methanolobus taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
3-phosphoshikimate 1-carboxyvinyltransferase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_11
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(7419..9419)
-----------------
DNA (2001bp)
protein (667aa)
PAS domain S-box Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
PAS fold family id=2293992 bin=GWB2_CP_45_9 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
PAS domain S-box
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_12
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(9394..10071)
-----------------
DNA (678bp)
protein (226aa)
girdin-like Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Uncharacterized protein id=4113645 bin=GWF2_OP3_43_52 species=Tetrapisispora blattae genus=Tetrapisispora taxon_order=Saccharomycetales taxon_class=Saccharomycetes phylum=Ascomycota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
girdin-like
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_13
R_WOR_2_45_21, WOR-2, Bacteria

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comp(10076..10843)
-----------------
DNA (768bp)
protein (256aa)
id=4113647 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
id=4113647 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_14
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(10856..11407)
-----------------
DNA (552bp)
protein (184aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Putative uncharacterized protein id=2564823 bin=GWC2_OP3_44_8 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_15
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(11404..12198)
-----------------
DNA (795bp)
protein (265aa)
hypothetical protein; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
RNA methyltransferase, TrmH family id=2564832 bin=GWC2_OP3_44_8 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
rRNA methyltransferase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_16
R_WOR_2_45_21, WOR-2, Bacteria

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comp(12202..13101)
-----------------
DNA (900bp)
protein (300aa)
ribokinase-like domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
PfkB family kinase id=2293985 bin=GWB2_CP_45_9 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
ribokinase-like domain-containing protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_17
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(13157..13771)
-----------------
DNA (615bp)
protein (205aa)
RluA family pseudouridine synthase (EC:3.2.1.17); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
RluA family pseudouridine synthase (EC:3.2.1.17)
hypothetical protein OTW25_13206 id=4113658 bin=GWF2_OP3_43_52 species=Ornithinibacillus scapharcae genus=Ornithinibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_18
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(13988..14692)
-----------------
DNA (705bp)
protein (235aa)
Viral A-type inclusion protein, putative Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Viral A-type inclusion protein, putative id=4113660 bin=GWF2_OP3_43_52 species=Bifidobacterium animalis genus=Bifidobacterium taxon_order=Bifidobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_19
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(14888..15565)
-----------------
DNA (678bp)
protein (226aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
CmpX protein id=2564851 bin=GWC2_OP3_44_8 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
transporter
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_20
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(15658..16470)
-----------------
DNA (813bp)
protein (271aa)
metallo-beta-lactamase family protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Putative uncharacterized protein id=4113664 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
metallo-beta-lactamase family protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_21
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(16458..16952)
-----------------
DNA (495bp)
protein (165aa)
id=4113666 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
id=4113666 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_22
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(16891..17910)
-----------------
DNA (1020bp)
protein (340aa)
membrane protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Uncharacterized protein id=1711786 bin=GWB2_CP_45_9 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
membrane protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_23
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(17907..18794)
-----------------
DNA (888bp)
protein (296aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase id=1711785 bin=GWB2_CP_45_9 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_7536_24
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(18798..19748)
-----------------
DNA (951bp)
protein (317aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32); K01596 phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] id=1711784 bin=GWB2_CP_45_9 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
Displaying 24 items

View Taxonomy