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RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(183..608)
-----------------
DNA (426bp)
protein (142aa)
Endonuclease Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Endonuclease, putative id=1944895 bin=GWB2_Ignavibacteria_35_12 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Endonuclease
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(828..3506)
-----------------
DNA (2679bp)
protein (893aa)
Endonuclease Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
putative restriction endonuclease/methyltransferase
BseRI endonuclease, putative id=24614578 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(3503..3790)
-----------------
DNA (288bp)
protein (96aa)
DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA repair protein radc id=4892427 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
radC; DNA repair protein RadC
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4082..4525
-----------------
DNA (444bp)
protein (148aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(4550..7273)
-----------------
DNA (2724bp)
protein (908aa)
protein translocase subunit secA Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Protein translocase subunit SecA id=4141227 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
protein translocase subunit secA
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(7527..7727)
-----------------
DNA (201bp)
protein (67aa)
Cold shock DNA/RNA-binding protein n=2 Tax=Geobacter metallireducens RepID=Q39W72_GEOMG
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
cold-shock protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(7814..8731)
-----------------
DNA (918bp)
protein (306aa)
Peptidase M23 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YLF9_9BACT
peptidase M23 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
peptidase M23
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

8915..9442
-----------------
DNA (528bp)
protein (176aa)
Putative HNH endonuclease n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z275_9BACT
HNH endonuclease Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
HNH endonuclease
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9521..10930)
-----------------
DNA (1410bp)
protein (470aa)
aldehyde dehydrogenase; K00155 [EC:1.2.1.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L7Q4_9BACT
aldehyde dehydrogenase
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(10944..11096)
-----------------
DNA (153bp)
protein (51aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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11419..12564
-----------------
DNA (1146bp)
protein (382aa)
citrate synthase (EC:2.3.3.1) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
citrate synthase (EC:2.3.3.1)
Citrate synthase id=2432694 bin=GWC2_Deltaproteobacteria_55_46 species=Synechocystis sp. PCC 7509 genus=Synechocystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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12793..13215
-----------------
DNA (423bp)
protein (141aa)
id=4843816 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
id=4843816 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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13270..13467
-----------------
DNA (198bp)
protein (66aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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13457..13726
-----------------
DNA (270bp)
protein (90aa)
Uncharacterized protein n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M0N4_9CYAN
RelE/StbE family addiction module toxin Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RelE/StbE family addiction module toxin
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

13733..15181
-----------------
DNA (1449bp)
protein (483aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
tRNA(Ile)-lysidine synthetase n=1 Tax=Thermoanaerobacter indiensis RepID=UPI00036D930F
tRNA(Ile)-lysidine synthetase
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15191..15721
-----------------
DNA (531bp)
protein (177aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRR9_9FIRM
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_9901_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(15724..15963)
-----------------
DNA (240bp)
protein (80aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GET4_GEOUR
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
Displaying 17 items

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