ggKbase home page

RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(124..264)
-----------------
DNA (141bp)
protein (47aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

378..1262
-----------------
DNA (885bp)
protein (295aa)
purine or other phosphorylase family 1; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Probable 6-oxopurine nucleoside phosphorylase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YXM6_9BACT
purine or other phosphorylase family 1
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1264..2601
-----------------
DNA (1338bp)
protein (446aa)
Peptidase U62 modulator of DNA gyrase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CL83_DESK7
peptidase U62; K03592 PmbA protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
peptidase U62
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(2617..2820)
-----------------
DNA (204bp)
protein (68aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YYN7_9BACT
Uncharacterized protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(2817..3089)
-----------------
DNA (273bp)
protein (91aa)
Uncharacterized protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein id=2532273 bin=GWA2_Planctomycetia_40_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3086..3298)
-----------------
DNA (213bp)
protein (71aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3299..3640)
-----------------
DNA (342bp)
protein (114aa)
Type II/IV secretion system protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y801_9FIRM
Type II/IV secretion system protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3749..5209)
-----------------
DNA (1461bp)
protein (487aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00038133FF
hypothetical protein; K07082 UPF0755 protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(5249..6139)
-----------------
DNA (891bp)
protein (297aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B63725
response regulator receiver modulated diguanylate cyclase/phosphodiesterase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
response regulator receiver modulated diguanylate cyclase/phosphodiesterase
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(6195..6974)
-----------------
DNA (780bp)
protein (260aa)
phage spo1 DNA polymerase domain-containing protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Phage SPO1 DNA polymerase-related protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z0V0_9BACT
phage spo1 DNA polymerase domain-containing protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7232..9922)
-----------------
DNA (2691bp)
protein (897aa)
ppdK; pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ppdK; pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate phosphate dikinase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAX3_DEFDS
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(10086..12161)
-----------------
DNA (2076bp)
protein (692aa)
glyS; glycyl-tRNA synthetase subunit beta (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
glyS; glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit id=3917801 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12233..13132)
-----------------
DNA (900bp)
protein (300aa)
glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TGH4_CALNY
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13143..14129)
-----------------
DNA (987bp)
protein (329aa)
radical SAM superfamily protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Radical SAM domain protein id=4864835 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
radical SAM superfamily protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14133..14465)
-----------------
DNA (333bp)
protein (111aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Alkylhydroperoxidase like protein, AhpD family id=2480723 bin=GWC2_Deltaproteobacteria_56_8 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

14672..15163
-----------------
DNA (492bp)
protein (164aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00035D45A5
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15144..15761
-----------------
DNA (618bp)
protein (206aa)
Putative Thiol-disulfide oxidoreductase resA n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z0L5_9BACT
alkyl hydroperoxide reductase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
alkyl hydroperoxide reductase
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(15897..17201)
-----------------
DNA (1305bp)
protein (435aa)
Pyrimidine-nucleoside phosphorylase; K00756 pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
deoA; thymidine phosphorylase (EC:2.4.2.4)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) RepID=B9K7H7_THENN
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

17377..19713
-----------------
DNA (2337bp)
protein (779aa)
CHASE2 domain-containing protein; K01768 adenylate cyclase [EC:4.6.1.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
CHASE2 domain protein n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W535_DESIS
CHASE2 domain-containing protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

19740..20225
-----------------
DNA (486bp)
protein (162aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=2480937 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

20222..21082
-----------------
DNA (861bp)
protein (287aa)
peptidase M48 Ste24p Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Peptidase M48 Ste24p id=2480933 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
peptidase M48 Ste24p
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

21089..22354
-----------------
DNA (1266bp)
protein (422aa)
membrane protein involved in aromatic hydrocarbon degradation; K06076 long-chain fatty acid transport protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Membrane protein involved in aromatic hydrocarbon degradation id=2480928 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
membrane protein involved in aromatic hydrocarbon degradation
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_4030_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(22489..23169)
-----------------
DNA (681bp)
protein (227aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Displaying 23 items

View Taxonomy