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RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_42395

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_42395_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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1..675
DNA (675bp) protein (225aa)
DNA mismatch repair protein MutL n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=MUTL_HALOH
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA mismatch repair protein MutL
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_42395_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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696..2159
DNA (1464bp) protein (488aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B6B3A1
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_42395_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(2224..3492)
DNA (1269bp) protein (423aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=7 Tax=Clostridium thermocellum RepID=AROA_CLOTH
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_42395_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(3576..3758)
DNA (183bp) protein (61aa)
30S ribosomal protein S21 n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=RS21_SYNAS
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S21
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_42395_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(3800..4093)
DNA (294bp) protein (98aa)
RNP-1 like RNA-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RNA-binding proteins (RRM domain) id=5802739 bin=PER_GWA2_38_35 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RNP-1 like RNA-binding protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_42395_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4466..5047
DNA (582bp) protein (194aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Cytochrome c5 id=1843319 bin=GWB2_Proteobacteria_55_19 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_42395_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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5040..5777
DNA (738bp) protein (246aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
40-residue YVTN family beta-propeller repeat protein id=4603154 bin=GWC2_Methylomirabilis_70_16 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 7 items

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