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This organism can only be binned in the context of its binning project 08E140C01_zone3_2013. Please contact the project owner (amano.yuki@jaea.go.jp) to become a member and gain access.

RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_1
R_Nitrospinae_39_10, Nitrospinae, Bacteria

Not on your lists

comp(1..105)
DNA (105bp) protein (35aa)
peptidase M50; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_trna_1
unknown

Not on your lists

comp(184..259)
DNA (76bp)
transferRNA
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

402..650
DNA (249bp) protein (83aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=2217865 bin=GWB2_CP_45_9 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
hypothetical protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(744..1433)
DNA (690bp) protein (230aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
A rare lipoprotein A id=1973271 bin=GWD2_Deltaproteobacteria_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(1435..3099)
DNA (1665bp) protein (555aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI0003778B17
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3247..4692)
DNA (1446bp) protein (482aa)
hemG; protoporphyrinogen oxidase (EC:1.3.3.4); K00231 oxygen-dependent protoporphyrinogen oxidase [EC:1.3.3.4] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hemG; protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase id=2233789 bin=GWB2_Proteobacteria_55_19 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(4735..5292)
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=2 Tax=Geobacter sulfurreducens RepID=RRF_GEOSL
frr; ribosome recycling factor; K02838 ribosome recycling factor Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
frr; ribosome recycling factor
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(5335..6054)
DNA (720bp) protein (240aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
pyrH; uridylate kinase
Uridylate kinase id=8266233 bin=CD_OP8_4m species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(6073..6666)
DNA (594bp) protein (198aa)
Elongation factor Ts n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAD9_DEFDS
tsf; translation elongation factor Ts; K02357 elongation factor Ts Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
tsf; translation elongation factor Ts
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(6744..7538)
DNA (795bp) protein (265aa)
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S2 id=4945638 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
30S ribosomal protein S2
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7664..8872)
DNA (1209bp) protein (403aa)
glutamate N-acetyltransferase (EC:2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
glutamate N-acetyltransferase (EC:2.3.1.35)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQQ5_9FIRM
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(8869..9909)
DNA (1041bp) protein (347aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Desulfotalea psychrophila (strain LSv54 / DSM 12343) RepID=ARGC_DESPS
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(9912..10304)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=RS9_PELCD
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpsI; 30S ribosomal protein S9
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(10314..10748)
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IUC9_9FIRM
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rplM; 50S ribosomal protein L13
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

10806..11726
DNA (921bp) protein (307aa)
nadA; quinolinate synthetase; K03517 quinolinate synthase [EC:2.5.1.72] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Quinolinate synthase A n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=NADA_GEOBB
nadA; quinolinate synthetase
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(11733..11903)
DNA (171bp) protein (57aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12199..12429)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YL94_THEYD
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12431..12727)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=2 Tax=Thermodesulfovibrio yellowstonii RepID=B5YL93_THEYD
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_CP_39_82_rifcsphigho2_02_scaffold_10153_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12734..12871)
DNA (138bp) protein (46aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Displaying 19 items

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