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RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_1
unknown

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comp(16..297)
-----------------
DNA (282bp)
protein (94aa)

This feature has no annotations

RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_2

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305..1735
-----------------
DNA (1431bp)
protein (477aa)
Excinuclease ABC subunit C n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0Z5_9PLAN id=120270 bin=ACD76 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
UvrABC system protein C {ECO:0000313|EMBL:KKR32037.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
excinuclease ABC subunit C
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_3
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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1854..2768
-----------------
DNA (915bp)
protein (305aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
D-alanyl-alanine synthetase A (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] id=5803367 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
D-alanine--D-alanine ligase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_trna_1
unknown

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2801..2873
-----------------
DNA (73bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_4

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comp(2959..3933)
-----------------
DNA (975bp)
protein (325aa)
Transcriptional regulator {ECO:0000313|EMBL:KKR32039.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
tcx:Tcr_0336 hypothetical protein id=73316 bin=ACD51 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
AAA ATPase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_5
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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3979..4545
-----------------
DNA (567bp)
protein (189aa)
prx2-1; 2-cysteine peroxiredoxin (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
prx-1; peroxiredoxin (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] id=5227199 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
prx2-1; 2-cysteine peroxiredoxin (EC:1.11.1.15)
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_6
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(4843..5154)
-----------------
DNA (312bp)
protein (104aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_7
unknown

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comp(5170..5292)
-----------------
DNA (123bp)
protein (41aa)

This feature has no annotations

RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_8

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comp(5355..6041)
-----------------
DNA (687bp)
protein (229aa)
Glycosyl transferase family 2 n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VR63_METIM id=5103423 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KKR45252.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
Glycosyl transferase family 2
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_9

Not on your lists

comp(6047..7597)
-----------------
DNA (1551bp)
protein (517aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00035D7D5B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKR32043.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_10
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(7623..7850)
-----------------
DNA (228bp)
protein (76aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_11
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

7867..8121
-----------------
DNA (255bp)
protein (85aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_12
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

8231..9961
-----------------
DNA (1731bp)
protein (577aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
penicillin-binding protein 2 (EC:2.4.1.129)
penicillin-binding protein 2; K05515 penicillin-binding protein 2 id=5803382 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_13524_13

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10129..10518
-----------------
DNA (390bp)
protein (130aa)
Transcription elongation factor GreA {ECO:0000313|EMBL:KKR32047.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
Transcription elongation factor GreA id=4995450 bin=GWA2_OP3_53_43 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
transcription elongation factor GreA
Displaying 14 items

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