ggKbase home page

RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_1
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(47..148)
DNA (102bp) protein (34aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_2
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(173..1063)
DNA (891bp) protein (297aa)
tatD; deoxyribonuclease, hydrolase (EC:3.1.21.-); K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hydrolase, TatD family; K03424 TatD DNase family protein [EC:3.1.21.-] id=5227233 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
tatD; deoxyribonuclease, hydrolase (EC:3.1.21.-)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_3

Not on your lists


comp(1369..2811)
DNA (1443bp) protein (481aa)
Methionyl-tRNA synthetase n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZ48_9BACT
Methionine-tRNA ligase {ECO:0000313|EMBL:KKR61546.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
methionyl-tRNA synthetase
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_4

Not on your lists

comp(2833..4008)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q0F0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR61547.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_5
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

4049..4504
DNA (456bp) protein (152aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Putative uncharacterized protein id=3305474 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_6
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

4545..4784
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B78460
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_trna_1
unknown

Not on your lists

4802..4873
DNA (72bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_7
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(5208..5507)
DNA (300bp) protein (100aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_8
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

5600..5821
DNA (222bp) protein (74aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_9
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(6124..7200)
DNA (1077bp) protein (359aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_10
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

7340..7807
DNA (468bp) protein (156aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_11
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(7898..8506)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4N8I4_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KKS11299.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_12
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

8717..9274
DNA (558bp) protein (186aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
transmembrane_regions id=5227497 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_13
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

9280..11574
DNA (2295bp) protein (765aa)
ribonucleoside-triphosphate reductase (EC:1.17.4.2); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
ribonucleoside-triphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] id=5095183 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Ribonucleoside-triphosphate reductase
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_14
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

11640..11879
DNA (240bp) protein (80aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS11303.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_15
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

11889..12479
DNA (591bp) protein (197aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS11304.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_16
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

12515..13045
DNA (531bp) protein (177aa)
pduO; cobalamin adenosyltransferase PduO (EC:2.5.1.17)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZ73_9BACT
ATP/cobalamin adenosyltransferase {ECO:0000313|EMBL:KKS11305.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_17
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(13048..15180)
DNA (2133bp) protein (711aa)
DNA gyrase subunit beta (EC:5.99.1.3)
Gyrase subunit B protein {ECO:0000313|EMBL:KKS11306.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
id=5226904 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_18
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

15309..17201
DNA (1893bp) protein (631aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein id=15190336 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_9343_19

Not on your lists

17225..17887
DNA (663bp) protein (221aa)
Ribosomal large subunit pseudouridine synthase F {ECO:0000313|EMBL:KKR61562.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
Ribosomal large subunit pseudouridine synthase F id=3012793 bin=GWC1_OD1_38_17 species=Eubacterium ventriosum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rluF; ribosomal large subunit pseudouridine synthase F
Displaying 20 items

View Taxonomy