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rifcsphigho2_02_scaffold_6903

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_6903_1
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1..795)
DNA (795bp) protein (265aa)
hypothetical protein; K06942 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
GTP-binding protein YchF id=3728787 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
GTP-binding protein YchF
rifcsphigho2_02_scaffold_6903_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1226..1489)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00037C2835
RNA-directed DNA polymerase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNA-directed DNA polymerase
rifcsphigho2_02_scaffold_6903_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1440..1823)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Microchaete sp. PCC 7126 RepID=UPI000344D969
RNA-directed DNA polymerase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNA-directed DNA polymerase
rifcsphigho2_02_scaffold_6903_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1780..2157)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ITZ4_9CHRO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
rifcsphigho2_02_scaffold_6903_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(2255..2842)
DNA (588bp) protein (196aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_6903_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

2992..3279
DNA (288bp) protein (96aa)
hypothetical protein n=2 Tax=Aminicenantes RepID=UPI00037A118A
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_6903_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

3260..3691
DNA (432bp) protein (144aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Uncharacterized protein id=3984599 bin=GWF2_OP3_43_52 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
rifcsphigho2_02_scaffold_6903_trna_1
unknown

Not on your lists

comp(3949..4026)
DNA (78bp)
transferRNA
rifcsphigho2_02_scaffold_6903_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4132..4368)
DNA (237bp) protein (79aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_6903_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4365..4895)
DNA (531bp) protein (177aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative uncharacterized protein id=4969214 bin=GWA2_Elusimicrobia_69_24 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
rifcsphigho2_02_scaffold_6903_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4892..5092)
DNA (201bp) protein (67aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_6903_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

5157..6722
DNA (1566bp) protein (522aa)
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037E974F
L-aspartate oxidase
rifcsphigho2_02_scaffold_6903_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(6707..8227)
DNA (1521bp) protein (507aa)
single-stranded nucleic acid binding R3H domain-containing protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
single-stranded nucleic acid binding R3H domain-containing protein id=14633013 bin=bin9_gal15 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
single-stranded nucleic acid binding R3H domain-containing protein
rifcsphigho2_02_scaffold_6903_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(8237..8515)
DNA (279bp) protein (93aa)
Transcriptional regulator n=1 Tax=Brevibacillus panacihumi W25 RepID=V6MCW0_9BACL
hbs; DNA-binding protein HU; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hbs; DNA-binding protein HU
rifcsphigho2_02_scaffold_6903_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(8512..9450)
DNA (939bp) protein (313aa)
pyruvate:ferredoxin oxidoreductase beta subunit ; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
pyruvate:ferredoxin oxidoreductase beta subunit ; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] id=7201012 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
pyruvate:ferredoxin oxidoreductase beta subunit
rifcsphigho2_02_scaffold_6903_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(9455..10621)
DNA (1167bp) protein (389aa)
pyruvate ferredoxin oxidoreductase subunit alpha (EC:1.2.7.1); K00169 pyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.1] id=24609420 bin=RAAC11 species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
2-oxoacid:ferredoxin oxidoreductase, alpha subunit Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
2-oxoacid:ferredoxin oxidoreductase, alpha subunit
rifcsphigho2_02_scaffold_6903_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(10625..10921)
DNA (297bp) protein (99aa)
pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta; K00171 pyruvate ferredoxin oxidoreductase, delta subunit [EC:1.2.7.1] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Pyruvate synthase subunit PorD id=3315093 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
rifcsphigho2_02_scaffold_6903_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(10922..11506)
DNA (585bp) protein (195aa)
pyruvate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.1); K00172 pyruvate ferredoxin oxidoreductase, gamma subunit [EC:1.2.7.1] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
pyruvate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.1)
Pyruvate ferredoxin oxidoreductase, gamma subunit id=2068681 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
rifcsphigho2_02_scaffold_6903_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(11494..12177)
DNA (684bp) protein (228aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_6903_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12181..12774)
DNA (594bp) protein (198aa)
Recombination protein RecR n=1 Tax=Thermincola potens (strain JR) RepID=D5X8W6_THEPJ
recombination protein RecR; K06187 recombination protein RecR Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
recombination protein RecR
rifcsphigho2_02_scaffold_6903_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12774..13073)
DNA (300bp) protein (100aa)
Nucleoid-associated protein HMPREF1023_01057 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Nucleoid-associated protein HMPREF1023_01057 id=2068690 bin=GWE2_RBX1_39_32 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
rifcsphigho2_02_scaffold_6903_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13070..14533)
DNA (1464bp) protein (488aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau id=2068693 bin=GWE2_RBX1_39_32 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
rifcsphigho2_02_scaffold_6903_22
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(14607..14795)
DNA (189bp) protein (63aa)
HEPN domain-containing protein Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
rifcsphigho2_02_scaffold_6903_23
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(14782..15126)
DNA (345bp) protein (115aa)
DNA polymerase subunit beta Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
DNA polymerase beta domain protein region id=4527463 bin=GWF2_OP9_related_35_9 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
DNA polymerase beta domain-containing protein
rifcsphigho2_02_scaffold_6903_24
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

Not on your lists

15237..15539
DNA (303bp) protein (101aa)
Integrase core domain. Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
Displaying 25 items

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