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rifcsphigho2_02_scaffold_3161

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_3161_1
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

3..941
DNA (939bp) protein (313aa)
Uncharacterized protein Cbei_0202 n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YB84_9DELT
hypothetical protein; K07137 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
rifcsphigho2_02_scaffold_3161_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

992..2011
DNA (1020bp) protein (340aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_3161_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

2288..3202
DNA (915bp) protein (305aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_3161_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

3263..4609
DNA (1347bp) protein (449aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_3161_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4688..5014)
DNA (327bp) protein (109aa)
DNA polymerase beta domain protein region Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
DNA polymerase beta domain protein region id=4213786 bin=GWC2_OP3_44_8 species=Caldicellulosiruptor bescii genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
rifcsphigho2_02_scaffold_3161_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4993..5394)
DNA (402bp) protein (134aa)
HEPN domain protein n=1 Tax=Bacteroidetes bacterium oral taxon 272 str. F0290 RepID=S8FG47_9BACT
HEPN domain-containing protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
HEPN domain-containing protein
rifcsphigho2_02_scaffold_3161_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

5514..6095
DNA (582bp) protein (194aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_3161_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

6191..7012
DNA (822bp) protein (274aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein id=5050168 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_3161_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

7303..7428
DNA (126bp) protein (42aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_3161_trna_1
unknown

Not on your lists

comp(7394..7476)
DNA (83bp)
transferRNA
rifcsphigho2_02_scaffold_3161_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(7603..7728)
DNA (126bp) protein (42aa)
hypothetical protein n=1 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI00039F57D5
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_3161_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(7735..8244)
DNA (510bp) protein (170aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNA methyltransferase n=1 Tax=Clostridium sp. CAG:273 RepID=R7L9M7_9CLOT
TrmH family RNA methyltransferase
rifcsphigho2_02_scaffold_3161_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(8237..9433)
DNA (1197bp) protein (399aa)
acetylornithine transaminase (EC:2.6.1.11); K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Acetylornithine aminotransferase id=4573784 bin=GWC2_Deltaproteobacteria_55_46 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
4-aminobutyrate aminotransferase
rifcsphigho2_02_scaffold_3161_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

9478..11661
DNA (2184bp) protein (728aa)
peptidase S8 and S53 subtilisin kexin sedolisin; K14645 serine protease [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Protease C2 n=2 Tax=Thermoactinomyces RepID=D3YLJ2_9BACL
peptidase S8 and S53 subtilisin kexin sedolisin
rifcsphigho2_02_scaffold_3161_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(11672..12571)
DNA (900bp) protein (300aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_3161_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13156..15558)
DNA (2403bp) protein (801aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
id=3524647 bin=GWF2_OP9_related_35_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
rifcsphigho2_02_scaffold_3161_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(15558..16799)
DNA (1242bp) protein (414aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=1831167 bin=GWD2_RBX1-related_39_127 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
rifcsphigho2_02_scaffold_3161_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(16804..17787)
DNA (984bp) protein (328aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AVV2_SYNWW
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
rifcsphigho2_02_scaffold_3161_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(17796..18038)
DNA (243bp) protein (81aa)
acpP; acyl carrier protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Acyl carrier protein id=4361760 bin=GWF2_OP9_related_35_9 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
acpP; acyl carrier protein
rifcsphigho2_02_scaffold_3161_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18056..18805)
DNA (750bp) protein (250aa)
3-oxoacyl-(acyl-carrier-protein) reductase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
3-oxoacyl-(Acyl-carrier-protein) reductase id=3030327 bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
3-oxoacyl-(acyl-carrier-protein) reductase
rifcsphigho2_02_scaffold_3161_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18786..19661)
DNA (876bp) protein (292aa)
ACP S-malonyltransferase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Desmospora sp. 8437 RepID=F5SCR6_9BACL
malonyl CoA-ACP transacylase
rifcsphigho2_02_scaffold_3161_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(19663..20868)
DNA (1206bp) protein (402aa)
etfA; Electron transfer flavoprotein, alpha subunit Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative electron transfer flavoprotein alpha-subunit (EtfA and 4Fe-4S ferredoxin modules) id=4237379 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
etfA; Electron transfer flavoprotein, alpha subunit
rifcsphigho2_02_scaffold_3161_22
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(20868..21650)
DNA (783bp) protein (261aa)
electron transfer flavoprotein subunit beta n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B48F47
electron transfer flavoprotein alpha/beta-subunit; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Electron transfer flavoprotein alpha/beta-subunit
rifcsphigho2_02_scaffold_3161_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

21737..24085
DNA (2349bp) protein (783aa)
RNA polymerase sigma factor SigA n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GBE7_9FIRM
RNA polymerase, sigma 70 subunit, RpoD Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNA polymerase, sigma 70 subunit, RpoD
rifcsphigho2_02_scaffold_3161_24
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(24114..25256)
DNA (1143bp) protein (381aa)
AAA+ superfamily protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
AAA+ superfamily protein id=3160448 bin=GWC2_Bacteroidetes_40_22 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
AAA+ superfamily protein
rifcsphigho2_02_scaffold_3161_25
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(25350..26510)
DNA (1161bp) protein (387aa)
acyl-CoA dehydrogenase, short-chain specific (EC:1.3.99.2) Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Acyl-CoA dehydrogenase, short-chain specific id=1922839 bin=GWE2_RBX1_39_32 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
acyl-CoA dehydrogenase, short-chain specific
rifcsphigho2_02_scaffold_3161_26
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(26514..27482)
DNA (969bp) protein (323aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CWW3_HALOH
rifcsphigho2_02_scaffold_3161_27
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(27487..28455)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00037F09BD
fatty acid/phospholipid synthesis protein PlsX Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
fatty acid/phospholipid synthesis protein PlsX
rifcsphigho2_02_scaffold_3161_28
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(28460..28666)
DNA (207bp) protein (69aa)
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L32 id=3647820 bin=GWA2_Elusimicrobia_56_46 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
50S ribosomal protein L32
rifcsphigho2_02_scaffold_3161_29
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(28801..29676)
DNA (876bp) protein (292aa)
tyrosine recombinase XerC n=1 Tax=Brevibacillus laterosporus RepID=UPI000375DF89
tyrosine recombinase XerC; K03733 integrase/recombinase XerC Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
xerC_2; tyrosine recombinase XerC
Displaying items 1-30 of 51 in total

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