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rifcsphigho2_02_scaffold_9768

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_9768_1
R_WOR_1_46_20, WOR-1, Bacteria

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1..828
DNA (828bp) protein (276aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Methyltransferase domain protein id=1941572 bin=GWD2_RBX1-related_39_127 species=Bdellovibrio exovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
methyltransferase
rifcsphigho2_02_scaffold_9768_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

825..1331
DNA (507bp) protein (169aa)
sensor histidine kinase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative Histidine kinase, contains GAF domain id=4808417 bin=GWC2_OP3-like_45_7 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
rifcsphigho2_02_scaffold_9768_3
R_WOR_1_46_20, WOR-1, Bacteria

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1328..2674
DNA (1347bp) protein (449aa)
sensor histidine kinase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative Histidine kinase, contains GAF domain id=1832772 bin=GWE2_Bacteroidetes_42_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
sensor histidine kinase, HAMP domain-containing
rifcsphigho2_02_scaffold_9768_4
R_WOR_1_46_20, WOR-1, Bacteria

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comp(2671..3153)
DNA (483bp) protein (161aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Response regulator receiver id=4022108 bin=GWF2_OP9_related_35_9 species=Gloeocapsa sp. PCC 73106 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
rifcsphigho2_02_scaffold_9768_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

3461..3898
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Campylobacter ureolyticus ACS-301-V-Sch3b RepID=S3XGB7_9PROT
ferric uptake regulator, Fur family; K03711 Fur family transcriptional regulator, ferric uptake regulator Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Fur family transcriptional regulator
rifcsphigho2_02_scaffold_9768_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

3928..4107
DNA (180bp) protein (60aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_9768_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

4149..6122
DNA (1974bp) protein (658aa)
feoB; ferrous iron transport protein B; K04759 ferrous iron transport protein B Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Small GTP-binding protein id=3159245 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
feoB; ferrous iron transport protein B
rifcsphigho2_02_scaffold_9768_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

6295..6942
DNA (648bp) protein (216aa)
Iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator id=15192164 bin=GWC2_NOV_55_46 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
Iron (metal) dependent repressor
rifcsphigho2_02_scaffold_9768_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(6945..7325)
DNA (381bp) protein (127aa)
phoP1; alkaline phosphatase synthesis transcriptional regulatory protein PhoP Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Two component transcriptional regulator, winged helix family id=4802009 bin=GWC2_OP3_44_8 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
phoP1; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
rifcsphigho2_02_scaffold_9768_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(7315..8676)
DNA (1362bp) protein (454aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
multi-component transcriptional regulator, winged helix family Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein id=8266645 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
rifcsphigho2_02_scaffold_9768_11
R_WOR_1_46_20, WOR-1, Bacteria

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8775..10277
DNA (1503bp) protein (501aa)
general secretory pathway protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Type II secretion system protein E (GspE) id=2050228 bin=GWB2_CP_45_9 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
general secretory pathway protein E
rifcsphigho2_02_scaffold_9768_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

10264..11496
DNA (1233bp) protein (411aa)
type ii secretion system f domain; K12278 MSHA biogenesis protein MshG Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Type II secretion system F domain protein id=4948406 bin=GWC2_Nitrospirae_57_13 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
type II secretion system f domain
rifcsphigho2_02_scaffold_9768_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

11558..11941
DNA (384bp) protein (128aa)
putative fimbrial protein; K02456 general secretion pathway protein G Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative fimbrial protein id=3078993 bin=GWA2_OP3_52_12 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
putative fimbrial protein
rifcsphigho2_02_scaffold_9768_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

12022..12549
DNA (528bp) protein (176aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_9768_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

12546..12944
DNA (399bp) protein (133aa)
Marine sediment metagenome DNA, contig: S06H3_L00991 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_9768_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

12937..13422
DNA (486bp) protein (162aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_9768_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

13419..14360
DNA (942bp) protein (314aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Displaying 17 items

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