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rifcsphigho2_02_scaffold_2484

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_2484_1
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

1..114
DNA (114bp) protein (38aa)
filamentation induced by cAMP protein fic Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Filamentation induced by cAMP protein Fic id=3799621 bin=GWF2_OP3_43_52 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rifcsphigho2_02_scaffold_2484_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(485..1144)
DNA (660bp) protein (220aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2484_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1564..1908)
DNA (345bp) protein (115aa)
S23 ribosomal protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
S23 ribosomal protein id=5095226 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
S23 ribosomal protein
rifcsphigho2_02_scaffold_2484_trna_2
unknown

Not on your lists

comp(2030..2103)
DNA (74bp)
transferRNA
rifcsphigho2_02_scaffold_2484_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

2126..3478
DNA (1353bp) protein (451aa)
rpoN; RNA polymerase sigma-54 factor; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNA polymerase, sigma 54 subunit, RpoN id=1870876 bin=GWE2_RBX1_39_32 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
rpoN; RNA polymerase sigma-54 factor
rifcsphigho2_02_scaffold_2484_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

3465..4844
DNA (1380bp) protein (460aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
AtoC; response regulator; K07714 two-component system, NtrC family, response regulator AtoC id=14626375 bin=bin7_NC10_sister species=Desulfotignum phosphitoxidans genus=Desulfotignum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
rifcsphigho2_02_scaffold_2484_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

4888..5307
DNA (420bp) protein (140aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2484_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

5300..6562
DNA (1263bp) protein (421aa)
Sigma-54 interaction domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8EWB0_9DELT
Fis family transcriptional regulator; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Fis family transcriptional regulator
rifcsphigho2_02_scaffold_2484_trna_1
unknown

Not on your lists

comp(6569..6653)
DNA (85bp)
transferRNA
rifcsphigho2_02_scaffold_2484_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(6663..7094)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Bacillus sp. 10403023 RepID=UPI00028A038E
S1 RNA binding domain-containing protein; K07571 S1 RNA binding domain protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
S1 RNA binding domain-containing protein
rifcsphigho2_02_scaffold_2484_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(7102..7365)
DNA (264bp) protein (88aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2484_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(7369..8139)
DNA (771bp) protein (257aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMF2_9BACT
type 4 prepilin-like proteins leader peptide processing enzyme Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
type 4 prepilin-like proteins leader peptide processing enzyme
rifcsphigho2_02_scaffold_2484_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

8242..9081
DNA (840bp) protein (280aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Lipoyl synthase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=LIPA_MOOTA
lipoyl synthase
rifcsphigho2_02_scaffold_2484_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

9078..10247
DNA (1170bp) protein (390aa)
aspartate aminotransferase; K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Aminotransferase class I and II n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KL21_CYAP7
aspartate aminotransferase
rifcsphigho2_02_scaffold_2484_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

10240..11235
DNA (996bp) protein (332aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RPK4_HALHG
rifcsphigho2_02_scaffold_2484_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


11235..12074
DNA (840bp) protein (280aa)
dimethyladenosine transferase (EC:2.1.1.48); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
dimethyladenosine transferase (EC:2.1.1.48)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Paenibacillus vortex V453 RepID=E5YPX1_9BACL
rifcsphigho2_02_scaffold_2484_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12090..13271)
DNA (1182bp) protein (394aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2484_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13285..13584)
DNA (300bp) protein (100aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2484_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

13675..14610
DNA (936bp) protein (312aa)
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] id=14626418 bin=bin7_NC10_sister species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
malate dehydrogenase
rifcsphigho2_02_scaffold_2484_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

14699..15541
DNA (843bp) protein (281aa)
TtdA; fumarate hydratase (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
TtdA; fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase I, N-terminal domain or alpha subunit subfamily n=1 Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7RAE0_9THEO
rifcsphigho2_02_scaffold_2484_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

15538..16080
DNA (543bp) protein (181aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta; K01678 fumarate hydratase subunit beta [EC:4.2.1.2] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type n=1 Tax=Campylobacter ureolyticus ACS-301-V-Sch3b RepID=S3YNY0_9PROT
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta
rifcsphigho2_02_scaffold_2484_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

16037..16837
DNA (801bp) protein (267aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2484_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

16924..17148
DNA (225bp) protein (75aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2484_22
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

17129..17638
DNA (510bp) protein (170aa)
Predicted hydrolase of the HAD superfamily n=2 Tax=Caldanaerobacter subterraneus RepID=Q8RAG3_THETN
HAD superfamily hydrolase; K07015 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
HAD superfamily hydrolase
rifcsphigho2_02_scaffold_2484_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(17635..18234)
DNA (600bp) protein (200aa)
ruvA; holliday junction DNA helicase RuvA (EC:3.6.1.-); K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
ruvA; holliday junction DNA helicase RuvA (EC:3.6.1.-)
Holliday junction DNA helicase RuvA n=1 Tax=Butyrivibrio sp. AE2015 RepID=UPI0003B7180B
rifcsphigho2_02_scaffold_2484_24
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18231..18713)
DNA (483bp) protein (161aa)
Holliday junction endonuclease RuvC (EC:3.1.22.4) Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Holliday junction endonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0FA94_DESDL
rifcsphigho2_02_scaffold_2484_25
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18745..21789)
DNA (3045bp) protein (1015aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2C351_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
rifcsphigho2_02_scaffold_2484_26
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

21869..22738
DNA (870bp) protein (290aa)
beta-lactamase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Beta-lactamase id=2068641 bin=GWE2_RBX1_39_32 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
beta-lactamase
rifcsphigho2_02_scaffold_2484_27
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(22774..24219)
DNA (1446bp) protein (482aa)
general secretion pathway protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Type II secretion system protein A id=5043019 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
general secretion pathway protein
rifcsphigho2_02_scaffold_2484_28
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(24219..24917)
DNA (699bp) protein (233aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Displaying items 1-30 of 33 in total

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