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rifcsphigho2_02_scaffold_2227

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_2227_1
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(3..350)
DNA (348bp) protein (116aa)
chorismate mutase; K06208 chorismate mutase [EC:5.4.99.5] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Chorismate mutase n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R2P9_PIRSD
chorismate mutase
rifcsphigho2_02_scaffold_2227_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(364..819)
DNA (456bp) protein (152aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_
Biotin synthetase n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WHX8_9BACI
biotin--acetyl-CoA-carboxylase ligase
rifcsphigho2_02_scaffold_2227_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(911..2266)
DNA (1356bp) protein (452aa)
S-layer domain protein n=1 Tax=Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) RepID=D2RLS1_ACIFV
S-layer protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
S-layer protein
rifcsphigho2_02_scaffold_2227_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(2425..3591)
DNA (1167bp) protein (389aa)
NapA type Na+/H+ antiporter Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Na+/H+-exchanging protein id=5019909 bin=GWA2_Elusimicrobia_69_24 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
NapA type Na+/H+ antiporter
rifcsphigho2_02_scaffold_2227_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

3663..4034
DNA (372bp) protein (124aa)
prfA3; peptide chain release factor 1 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
peptidyl-tRNA hydrolase-like protein id=24526494 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
prfA3; peptide chain release factor 1
rifcsphigho2_02_scaffold_2227_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

4105..5004
DNA (900bp) protein (300aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2227_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4952..5767)
DNA (816bp) protein (272aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2227_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(5849..6133)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TTY1_MARTH
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
rifcsphigho2_02_scaffold_2227_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(6168..6338)
DNA (171bp) protein (57aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein id=1714245 bin=GWB2_Elusimicrobia_63_16 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB2_Elusimicrobia_63_16 organism_group=Elusimicrobia
rifcsphigho2_02_scaffold_2227_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

6420..7025
DNA (606bp) protein (202aa)
peptidyl-prolyl isomerase (EC:5.2.1.8) Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Streptomyces sp. 31A4 RepID=U5YNZ6_9ACTO
rifcsphigho2_02_scaffold_2227_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(7090..7365)
DNA (276bp) protein (92aa)
RNP-1 like RNA-binding protein n=6 Tax=Pelosinus fermentans RepID=I8RD02_9FIRM
RNA-binding region RNP-1 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNP-1 like RNA-binding protein
rifcsphigho2_02_scaffold_2227_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(7533..8285)
DNA (753bp) protein (251aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2227_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(8287..9537)
DNA (1251bp) protein (417aa)
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Homoserine dehydrogenase n=5 Tax=Pelosinus fermentans RepID=I8RU71_9FIRM
homoserine dehydrogenase
rifcsphigho2_02_scaffold_2227_14
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(9544..10488)
DNA (945bp) protein (315aa)
PrsA; phosphoribosylpyrophosphate synthetase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=3626355 bin=GWF2_OP9_related_35_9 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
rifcsphigho2_02_scaffold_2227_15
R_WOR_1_53_15, WOR-1, Bacteria

Not on your lists

comp(10533..11552)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI00037105BF
MiaB family RNA modification protein; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFCSPHIGHO2_01_FULL_WOR_1_53_15_curated
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB
rifcsphigho2_02_scaffold_2227_16
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

comp(11549..12226)
DNA (678bp) protein (226aa)
resolvase domain protein Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
id=4039387 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rifcsphigho2_02_scaffold_2227_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12508..12798)
DNA (291bp) protein (97aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RNP-1 like RNA-binding protein id=2852315 bin=GWF2_Lentisphaerae_49_21 species=Desulfovibrio hydrothermalis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
RNP-1 like RNA-binding protein
rifcsphigho2_02_scaffold_2227_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13004..13432)
DNA (429bp) protein (143aa)
transcription elongation factor GreA n=1 Tax=Moraxella boevrei RepID=UPI000370A2A4
greA; transcription elongation factor GreA Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
greA; transcription elongation factor GreA
rifcsphigho2_02_scaffold_2227_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13472..14269)
DNA (798bp) protein (266aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2227_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(14262..15662)
DNA (1401bp) protein (467aa)
Type IV pilus assembly protein PilM n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A6V5_CELGA
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
type IV pilus assembly protein PilM
rifcsphigho2_02_scaffold_2227_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(15681..16091)
DNA (411bp) protein (137aa)
id=3626439 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
id=3626439 bin=GWC2_Planctomycetes_45_44 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
rifcsphigho2_02_scaffold_2227_22
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(16063..17118)
DNA (1056bp) protein (352aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2227_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(17124..17513)
DNA (390bp) protein (130aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2227_24
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(17500..17934)
DNA (435bp) protein (145aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2227_25
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(17934..18242)
DNA (309bp) protein (103aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
exogenous DNA-binding protein id=4152153 bin=GWF2_Planctomycetes_50_10 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
hypothetical protein
rifcsphigho2_02_scaffold_2227_26
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18256..19296)
DNA (1041bp) protein (347aa)
Type II secretory pathway, component PulF n=1 Tax=Thermoanaerobacter thermohydrosulfuricus WC1 RepID=M8D0T0_THETY
Type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Type II secretion system F domain-containing protein
rifcsphigho2_02_scaffold_2227_27
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(19280..20710)
DNA (1431bp) protein (477aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K8W5_HALHC
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
rifcsphigho2_02_scaffold_2227_28
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(20714..21076)
DNA (363bp) protein (121aa)
Adenylate/guanylate cyclase n=1 Tax=uncultured bacterium RepID=K2A2C2_9BACT
two-component DNA-binding response regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
two-component DNA-binding response regulator
rifcsphigho2_02_scaffold_2227_29
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(21069..22274)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3714B
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
integral membrane sensor signal transduction histidine kinase
rifcsphigho2_02_scaffold_2227_30
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(22240..23862)
DNA (1623bp) protein (541aa)
multi-sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Multi-sensor hybrid histidine kinase id=4802007 bin=GWC2_OP3_44_8 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
multi-sensor signal transduction histidine kinase
Displaying items 1-30 of 36 in total

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