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RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_1
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

3..1346
-----------------
DNA (1344bp)
protein (448aa)
S-layer domain protein id=2824651 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_2
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

1464..2555
-----------------
DNA (1092bp)
protein (364aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003795D65
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_3
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

2639..3196
-----------------
DNA (558bp)
protein (186aa)
coiled-coil 75..96 id=4575 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_4
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

3308..3856
-----------------
DNA (549bp)
protein (183aa)
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_5
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

3853..4149
-----------------
DNA (297bp)
protein (99aa)
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_trna_8
unknown

Not on your lists

comp(4382..4453)
-----------------
DNA (72bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_6
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(4444..4608)
-----------------
DNA (165bp)
protein (55aa)
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_7
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


comp(4622..6010)
-----------------
DNA (1389bp)
protein (463aa)
BSCG--tRNA--synthetase--Histidyl
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidyl-tRNA synthetase id=1955921 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_trna_1
unknown

Not on your lists

6083..6156
-----------------
DNA (74bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_8
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

6218..6613
-----------------
DNA (396bp)
protein (132aa)
Two component transcriptional regulator, winged helix family n=1 Tax=uncultured bacterium RepID=K2BDG0_9BACT
phoP; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_9
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(6620..7687)
-----------------
DNA (1068bp)
protein (356aa)
Protease Do id=3736380 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
protease Do
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_10
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

7805..8476
-----------------
DNA (672bp)
protein (224aa)
seg 62..77 id=71737 bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_trna_2
unknown

Not on your lists

8432..8503
-----------------
DNA (72bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_11
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

8505..9044
-----------------
DNA (540bp)
protein (180aa)
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_trna_3
unknown

Not on your lists

9287..9358
-----------------
DNA (72bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_12
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

9697..9903
-----------------
DNA (207bp)
protein (69aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037C0E75
XRE family transcriptional regulator
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_13
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

9910..10560
-----------------
DNA (651bp)
protein (217aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00036B00AC
aminoglycoside phosphotransferase
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_14
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

10581..10829
-----------------
DNA (249bp)
protein (83aa)
Putative uncharacterized protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QYJ1_9EURY
Glutamate-rich protein grpB
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_15
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

10870..11148
-----------------
DNA (279bp)
protein (93aa)
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_16
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

11394..12674
-----------------
DNA (1281bp)
protein (427aa)
Phosphoribosylamine--glycine ligase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EFU3_THECK
phosphoribosylamine--glycine ligase
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_17
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(13020..14630)
-----------------
DNA (1611bp)
protein (537aa)
Uncharacterized protein n=1 Tax=Oryza glaberrima RepID=I1NRQ0_ORYGL
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_trna_7
unknown

Not on your lists

comp(14905..14975)
-----------------
DNA (71bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_trna_6
unknown

Not on your lists

comp(14984..15055)
-----------------
DNA (72bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_18
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(15097..15477)
-----------------
DNA (381bp)
protein (127aa)
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_19
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(15713..16549)
-----------------
DNA (837bp)
protein (279aa)
seg 15..28 id=31785 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_trna_5
unknown

Not on your lists

comp(16606..16689)
-----------------
DNA (84bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_20
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(16694..17362)
-----------------
DNA (669bp)
protein (223aa)
Intein-containing protein id=3506530 bin=GWC1_OD1_38_17 species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_21
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


comp(17574..17990)
-----------------
DNA (417bp)
protein (139aa)
BSCG--ribosomal--protein--L19
50S ribosomal protein L19 id=3486284 bin=GWA1_ZB2_49_26 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
LSU ribosomal protein L19P
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_22
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(18004..18699)
-----------------
DNA (696bp)
protein (232aa)
Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=K2G5Y6_9BACT
RluA family pseudouridine synthase
RIFCSPHIGHO2_02_FULL_OD1_47_11_rifcsphigho2_02_scaffold_13981_23
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(18704..19081)
-----------------
DNA (378bp)
protein (126aa)
Displaying items 1-30 of 34 in total

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