ggKbase home page

RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_1
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(54..455)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZP10_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


709..2046
DNA (1338bp) protein (446aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
glyQS; Glycine--tRNA ligase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=uncultured bacterium RepID=K1ZH08_9BACT
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_3
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

2115..3182
DNA (1068bp) protein (356aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Peptidase M24 n=2 Tax=Desulfotomaculum RepID=F6BA00_DESCC
peptidase M24
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

3276..4538
DNA (1263bp) protein (421aa)
peptidase M16 domain-containing protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
peptidase M16 domain-containing protein id=5084827 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
peptidase M16 domain-containing protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

4572..5591
DNA (1020bp) protein (340aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Putative uncharacterized protein id=2194132 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


5593..7017
DNA (1425bp) protein (475aa)
metG; methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Methionine--tRNA ligase id=2185712 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
methionyl-tRNA synthetase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

7028..7873
DNA (846bp) protein (282aa)
deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Sec-independent protein tatd n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WB38_FUSMR id=2676 bin=ACD11 species=Fusobacterium mortiferum genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
putative deoxyribonuclease
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

7987..8652
DNA (666bp) protein (222aa)
Transcriptional regulator, PaaX family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PEM5_BACCO id=2933 bin=ACD11 species=Bacillus coagulans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Transcriptional regulator, PaaX family Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

8877..9629
DNA (753bp) protein (251aa)
suhB; inositol-1-monophosphatase (Inositol-1-phosphatase) (I-1-Pase) (EC:3.1.3.25) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
suhB; inositol-1-monophosphatase (Inositol-1-phosphatase) (I-1-Pase) (EC:3.1.3.25)
Myo-inositol-1(Or 4)-monophosphatase n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SMV0_9CHLR
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_10
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

9630..10406
DNA (777bp) protein (259aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Inositol monophosphatase n=1 Tax=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) RepID=A5IMG9_THEP1
inositol monophosphatase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


10403..13237
DNA (2835bp) protein (945aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
aoe:Clos_2587 leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=89251 bin=ACD5 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=ACD5 organism_group=OD1-i organism_desc=OD1-i
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_12
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

13237..13926
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BA02_9BACT
nucleotidyl transferase Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Glucosamine-1-phosphate N-acetyltransferase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_13
R_SM2F11_46_14, SM2F11, Bacteria

Not on your lists

13947..14618
DNA (672bp) protein (224aa)
hypothetical protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
SUA5/YciO/YrdC/YwlC family translation factor; K07566 putative translation factor id=23345 bin=ACD22 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=ACD22 organism_group=WWE3 organism_desc=WWE3
tRNA threonylcarbamoyladenosine biosynthesis protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

14632..15798
DNA (1167bp) protein (389aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=5801373 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_15
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

15906..17231
DNA (1326bp) protein (442aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
serine hydroxymethyltransferase n=1 Tax=Caldibacillus debilis RepID=UPI0003737A50
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_16
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

17231..18007
DNA (777bp) protein (259aa)
undecaprenol kinase; K06153 undecaprenyl-diphosphatase [EC:3.6.1.27] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Undecaprenyl-diphosphatase n=1 Tax=uncultured bacterium RepID=K2FDK1_9BACT
undecaprenol kinase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_17
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

18004..18396
DNA (393bp) protein (131aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_18
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

18397..18627
DNA (231bp) protein (77aa)
Marine sediment metagenome DNA, contig: S03H2_L04550 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_trna_1
unknown

Not on your lists

18662..18745
DNA (84bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_19
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

18933..19481
DNA (549bp) protein (183aa)
pilin domain-containing protein; K02650 type IV pilus assembly protein PilA Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
gspG; T2SS protein G; K02456 general secretion pathway protein G id=5803077 bin=OD1_GWC2_34_28 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
General secretion pathway protein G
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_20
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(19592..20167)
DNA (576bp) protein (192aa)
putative General secretion pathway protein GspG Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Pili subunits id=5803357 bin=OD1_GWC2_34_28 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
fimbrial protein pilin
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_21
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

20410..20991
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
hypothetical protein cdiviTM7_02894 id=5226176 bin=RAAC3_TM7 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=RAAC3_TM7 organism_group=TM7
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_22
unknown

Not on your lists

20985..21119
DNA (135bp) protein (45aa)

This feature has no annotations

RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_23
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

21145..22008
DNA (864bp) protein (288aa)
SPFH domain / Band 7 family protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
mechanosensory protein 2 id=5085419 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
membrane protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_24
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(22010..22711)
DNA (702bp) protein (234aa)
3-hexulose-6-phosphate synthase; K13812 bifunctional enzyme Fae/Hps [EC:4.3.-.- 4.1.2.43] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; K13812 bifunctional enzyme Fae/Hps [EC:4.3.-.- 4.1.2.43] id=5085418 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
3-hexulose-6-phosphate synthase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_25
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(22785..23156)
DNA (372bp) protein (124aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_26
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

23282..23623
DNA (342bp) protein (114aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_27
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

23666..24235
DNA (570bp) protein (190aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_28
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

24245..25288
DNA (1044bp) protein (348aa)
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BV09_9GAMM
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_5091_29
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

25458..26465
DNA (1008bp) protein (336aa)
ParB-like partition protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0E8_9CLOT id=136434 bin=ACD8 species=Clostridium carboxidivorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
parB1; chromosome partitioning protein parb; K03497 chromosome partitioning protein, ParB family Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
stage 0 sporulation protein J
Displaying items 1-30 of 42 in total

View Taxonomy