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RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_1
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..88
DNA (87bp) protein (29aa)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacter
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_2

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135..446
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=uncultured bacterium RepID=K2ETV7_9BACT
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsJ; 30S ribosomal protein S10
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_3

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459..1247
DNA (789bp) protein (263aa)
50S ribosomal protein L3 n=1 Tax=uncultured bacterium RepID=K2EG83_9BACT
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplC; 50S ribosomal protein L3
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_4
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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1249..1869
DNA (621bp) protein (207aa)
50S ribosomal protein L4 id=3298607 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
50S ribosomal protein L4
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_5
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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1866..2186
DNA (321bp) protein (107aa)
50S ribosomal protein L23 id=3298606 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rplW; 50S ribosomal protein L23
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_6

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2189..3013
DNA (825bp) protein (275aa)
50S ribosomal protein L2 id=3298605 bin=GWC2_Alphaproteobacteria_42_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplB; 50S ribosomal protein L2
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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3029..3307
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=uncultured bacterium RepID=K2ETU9_9BACT
rpsS; 30S ribosomal protein S19 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rpsS; 30S ribosomal protein S19
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_8

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3310..3690
DNA (381bp) protein (127aa)
50S ribosomal protein L22 n=1 Tax=uncultured bacterium RepID=K2EG79_9BACT
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplV; 50S ribosomal protein L22
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_9
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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3690..4376
DNA (687bp) protein (229aa)
30S ribosomal protein S3 id=3298599 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rpsC; 30S ribosomal protein S3
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_10
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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4390..4812
DNA (423bp) protein (141aa)
50S ribosomal protein L16 (EC:4.1.3.40); K02878 large subunit ribosomal protein L16 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
50S ribosomal protein L16 n=1 Tax=uncultured bacterium RepID=K2DTD4_9BACT
50S ribosomal protein L16
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_11
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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4812..5006
DNA (195bp) protein (65aa)
50S ribosomal protein L29 id=3298594 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L29 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_12

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5017..5256
DNA (240bp) protein (80aa)
30S ribosomal protein S17 n=1 Tax=uncultured bacterium RepID=K2ETU2_9BACT
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsQ; 30S ribosomal protein S17
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_13
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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5291..5659
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=3298589 bin=GWC2_Alphaproteobacteria_42_16 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rplN; 50S ribosomal subunit protein L14
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_14
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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5659..5982
DNA (324bp) protein (108aa)
50S ribosomal protein L24 id=3298586 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rplX; 50S ribosomal protein L24
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_15
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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5989..6534
DNA (546bp) protein (182aa)
50S ribosomal protein L5 id=3298584 bin=GWC2_Alphaproteobacteria_42_16 species=Phaeospirillum molischianum genus=Phaeospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
50S ribosomal protein L5
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_16
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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6549..6854
DNA (306bp) protein (102aa)
30S ribosomal protein S14 id=3298581 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum amazonense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rpsN; 30S ribosomal protein S14
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_17
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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6866..7264
DNA (399bp) protein (133aa)
30S ribosomal protein S8 id=3298578 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rpsH; 30S ribosomal protein S8
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_18

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7275..7808
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=uncultured bacterium RepID=K2EG70_9BACT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplF; 50S ribosomal protein L6
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_19
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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7811..8173
DNA (363bp) protein (121aa)
50S ribosomal protein L18 id=3298398 bin=GWC2_Alphaproteobacteria_42_16 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplR; 50S ribosomal subunit protein L18 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
50S ribosomal protein L18
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_20
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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8185..8736
DNA (552bp) protein (184aa)
30S ribosomal protein S5 (EC:5.2.1.8); K02988 small subunit ribosomal protein S5 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
30S ribosomal protein S5 id=3298395 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Puniceispirillum marinum genus=Candidatus Puniceispirillum taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
30S ribosomal protein S5
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_21
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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8740..8934
DNA (195bp) protein (65aa)
50S ribosomal protein L30 id=3298393 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibulbus indolifex genus=Oceanibulbus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rpmD; 50S ribosomal protein L30
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_22
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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8939..9451
DNA (513bp) protein (171aa)
50S ribosomal protein L15 id=3298391 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rplO; 50S ribosomal protein L15
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_23

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9454..10797
DNA (1344bp) protein (448aa)
Protein translocase subunit SecY id=3298389 bin=GWC2_Alphaproteobacteria_42_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
preprotein translocase subunit SecY
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_24
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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10794..11486
DNA (693bp) protein (231aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
adk; adenylate kinase (EC:2.7.4.3)
adenylate kinase id=3298387 bin=GWC2_Alphaproteobacteria_42_16 species=Citromicrobium bathyomarinum genus=Citromicrobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_25
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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11521..11889
DNA (369bp) protein (123aa)
30S ribosomal protein S13 id=3298385 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rpsM; 30S ribosomal protein S13
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_26
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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11906..12298
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=uncultured bacterium RepID=K2FEN5_9BACT
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
30S ribosomal protein S11
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_27
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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12343..13359
DNA (1017bp) protein (339aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=uncultured bacterium RepID=K2ETR9_9BACT
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_28
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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13383..13814
DNA (432bp) protein (144aa)
50S ribosomal protein L17 id=3298377 bin=GWC2_Alphaproteobacteria_42_16 species=Pelagibacterium halotolerans genus=Pelagibacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
50S ribosomal protein L17
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_29
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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13901..14203
DNA (303bp) protein (101aa)
id=3298376 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
id=3298376 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_3227_30
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14205..14468)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DT97_9BACT
hypothetical protein
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
Displaying items 1-30 of 43 in total

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