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RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1309
-----------------
DNA (1308bp)
protein (436aa)
Sensor diguanylate cyclase/phosphodiesterase, PAS and PAS domain-containing n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AF25_GEOSK
Sensor diguanylate cyclase/phosphodiesterase, PAS and PAS domain-containing n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AF25_GEOSK
sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAC domain-containing Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAC domain-containing Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1385..3913
-----------------
DNA (2529bp)
protein (843aa)
Signaling protein YkoW n=1 Tax=Paenibacillus sp. P22 RepID=T2LYC6_9BACL
Signaling protein YkoW n=1 Tax=Paenibacillus sp. P22 RepID=T2LYC6_9BACL
diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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4218..7043
-----------------
DNA (2826bp)
protein (942aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6F6_9PROT
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6F6_9PROT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7072..7407)
-----------------
DNA (336bp)
protein (112aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Uncharacterized protein id=4412601 bin=GWF2_Melainabacteria_37_15 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
Uncharacterized protein id=4412601 bin=GWF2_Melainabacteria_37_15 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7404..8882)
-----------------
DNA (1479bp)
protein (493aa)
lpdA2; dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
lpdA2; dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
lpdA2; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
lpdA2; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9088..10401)
-----------------
DNA (1314bp)
protein (438aa)
Dihydrolipoamide acetyltransferase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3U9_9GAMM
Dihydrolipoamide acetyltransferase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3U9_9GAMM
2-oxoglutarate dehydrogenase E2 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
2-oxoglutarate dehydrogenase E2 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10420..13284)
-----------------
DNA (2865bp)
protein (955aa)
alpha-ketoglutarate decarboxylase; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
alpha-ketoglutarate decarboxylase; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sucA; 2-oxoglutarate dehydrogenase (EC:1.2.4.2)
sucA; 2-oxoglutarate dehydrogenase (EC:1.2.4.2)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13455..14072)
-----------------
DNA (618bp)
protein (206aa)
dsba oxidoreductase; K03673 thiol:disulfide interchange protein DsbA Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
dsba oxidoreductase; K03673 thiol:disulfide interchange protein DsbA Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Thiol:disulfide interchange protein DsbA id=1348379 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Thiol:disulfide interchange protein DsbA id=1348379 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14275..15684)
-----------------
DNA (1410bp)
protein (470aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-] Tax=RIFCSPHIGHO2_12_FULL_Gam
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-] Tax=RIFCSPHIGHO2_12_FULL_Gam
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLH0_THISH
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLH0_THISH
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15684..16181)
-----------------
DNA (498bp)
protein (166aa)
Putative uncharacterized protein n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3J8P0_NITOC
Putative uncharacterized protein n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3J8P0_NITOC
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16340..16795)
-----------------
DNA (456bp)
protein (152aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16875..18044
-----------------
DNA (1170bp)
protein (390aa)
ribonuclease D (EC:3.1.13.5); K03684 ribonuclease D [EC:3.1.13.5] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ribonuclease D (EC:3.1.13.5); K03684 ribonuclease D [EC:3.1.13.5] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ribonuclease D (EC:3.1.13.5)
ribonuclease D (EC:3.1.13.5)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18095..18958
-----------------
DNA (864bp)
protein (288aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19185..20405)
-----------------
DNA (1221bp)
protein (407aa)
membrane-bound lytic murein transglycosylase A; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
membrane-bound lytic murein transglycosylase A; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
murein transglycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614537
murein transglycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614537
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20454..21200
-----------------
DNA (747bp)
protein (249aa)
putative permease Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
putative permease Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
putative permease id=14632078 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin9_gal15 organism_group=GAL15
putative permease id=14632078 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin9_gal15 organism_group=GAL15
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21299..23632)
-----------------
DNA (2334bp)
protein (778aa)
topA; DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
topA; DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
topA; DNA topoisomerase I (EC:5.99.1.2)
topA; DNA topoisomerase I (EC:5.99.1.2)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23812..24294)
-----------------
DNA (483bp)
protein (161aa)
Protein Smg homolog n=3 Tax=Nitrosococcus RepID=SMG_NITOC
Protein Smg homolog n=3 Tax=Nitrosococcus RepID=SMG_NITOC
hypothetical protein; K03747 Smg protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein; K03747 Smg protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24323..25483)
-----------------
DNA (1161bp)
protein (387aa)
DNA protecting protein DprA n=2 Tax=Nitrosococcus oceani RepID=Q3J6U2_NITOC
DNA protecting protein DprA n=2 Tax=Nitrosococcus oceani RepID=Q3J6U2_NITOC
SMF protein; K04096 DNA processing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
SMF protein; K04096 DNA processing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25518..26639)
-----------------
DNA (1122bp)
protein (374aa)
LysM domain protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5G3_9GAMM
LysM domain protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5G3_9GAMM
peptidoglycan-binding LysM Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
peptidoglycan-binding LysM Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26806..27309
-----------------
DNA (504bp)
protein (168aa)
def_[H]; Peptide deformylase (EC:3.5.1.88) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
def_[H]; Peptide deformylase (EC:3.5.1.88) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
def_[H]; Peptide deformylase (EC:3.5.1.88)
def_[H]; Peptide deformylase (EC:3.5.1.88)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27427..28377
-----------------
DNA (951bp)
protein (317aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Methionyl-tRNA formyltransferase n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YX82_9GAMM
Methionyl-tRNA formyltransferase n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YX82_9GAMM
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28352..29695
-----------------
DNA (1344bp)
protein (448aa)
16S rRNA methyltransferase B n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6D1K1_PSEST
16S rRNA methyltransferase B n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6D1K1_PSEST
16S rRNA methyltransferase B Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
16S rRNA methyltransferase B Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29661..30245
-----------------
DNA (585bp)
protein (195aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JJJ4_9GAMM
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JJJ4_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_24
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30218..32563
-----------------
DNA (2346bp)
protein (782aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003747B28
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003747B28
PAS/PAC sensor signal transduction histidine kinase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
PAS/PAC sensor signal transduction histidine kinase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_1484_25
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32560..33882
-----------------
DNA (1323bp)
protein (441aa)
Ribosomal RNA small subunit methyltransferase B n=2 Tax=sulfur-oxidizing symbionts RepID=G2DF84_9GAMM
Ribosomal RNA small subunit methyltransferase B n=2 Tax=sulfur-oxidizing symbionts RepID=G2DF84_9GAMM
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Displaying 25 items

View Taxonomy