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rifcsplowo2_01_scaffold_15942

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsplowo2_01_scaffold_15942_1

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comp(45..719)
-----------------
DNA (675bp)
protein (225aa)
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific n=1 Tax=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) RepID=A6UPZ0_METVS id=5103830 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tritrans,polycis-undecaprenyl-diphosphate synthase, geranylgeranyl-diphosphate specific
rifcsplowo2_01_scaffold_15942_2
AR18, Woesearchaeaota, DPANN, Archaea

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752..1279
-----------------
DNA (528bp)
protein (176aa)
id=5045730 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_01_scaffold_15942_3
AR5, Aenigmarchaeota, DPANN, Archaea

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1337..4204
-----------------
DNA (2868bp)
protein (956aa)
psp3; putative alkaline protease id=18248412 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein
rifcsplowo2_01_scaffold_15942_4
AR17, Woesearchaeaota, DPANN, Archaea

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4243..4611
-----------------
DNA (369bp)
protein (123aa)
Ribonuclease P protein component 2
Ribonuclease P protein component 2 id=5800796 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_15942_5
AR18, Woesearchaeaota, DPANN, Archaea

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4574..5293
-----------------
DNA (720bp)
protein (240aa)
proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=5045733 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Proteasome subunit alpha
rifcsplowo2_01_scaffold_15942_6

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5298..5999
-----------------
DNA (702bp)
protein (234aa)
ASCG--Ribosome--maturation--protein--SDO1--homolog
Ribosome maturation protein SDO1 homolog n=4 Tax=Methanocaldococcus RepID=SDO1_METJA id=5103843 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosome maturation protein SDO1-like protein
rifcsplowo2_01_scaffold_15942_7

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6000..6707
-----------------
DNA (708bp)
protein (236aa)
exosome complex RNA-binding protein Rrp4; K03679 exosome complex component RRP4 id=5045735 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
putative exosome complex RNA-binding protein 1
rifcsplowo2_01_scaffold_15942_8

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6697..7407
-----------------
DNA (711bp)
protein (237aa)
ribosomal RNA-processing protein RRP41/SKI6 (EC:3.1.13.-); K11600 exosome complex component RRP41 id=5045736 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
exosome complex exonuclease Rrp41
rifcsplowo2_01_scaffold_15942_9

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7400..8179
-----------------
DNA (780bp)
protein (260aa)
Ribosomal RNA-processing protein RRP42 id=5800801 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Ribosomal RNA-processing protein RRP42
rifcsplowo2_01_scaffold_15942_10
AR18, Woesearchaeaota, DPANN, Archaea

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8176..8379
-----------------
DNA (204bp)
protein (68aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000360FC43
hypothetical protein
rifcsplowo2_01_scaffold_15942_11
AR18, Woesearchaeaota, DPANN, Archaea

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8381..9259
-----------------
DNA (879bp)
protein (293aa)
phosphopyruvate hydratase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] id=5045739 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
eno; phosphopyruvate hydratase (EC:4.2.1.11)
rifcsplowo2_01_scaffold_15942_12
Thermofilum sp. 1910b, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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9305..9511
-----------------
DNA (207bp)
protein (69aa)
30S ribosomal protein S17e n=1 Tax=Thermofilum sp. 1910b RepID=S6A5D7_9CREN
SSU ribosomal protein S17e
rifcsplowo2_01_scaffold_15942_13
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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9508..9807
-----------------
DNA (300bp)
protein (100aa)
DNA/RNA-binding protein Alba; K03622 archaea-specific DNA-binding protein id=5043654 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA/RNA-binding protein Alba
rifcsplowo2_01_scaffold_15942_14
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10003..10575
-----------------
DNA (573bp)
protein (191aa)
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDB0_9FIRM
rifcsplowo2_01_scaffold_15942_15
Entamoeba invadens, Entamoeba, Eukaryota

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10679..10852
-----------------
DNA (174bp)
protein (58aa)
enolase (EC:4.2.1.11)
Enolase, putative n=1 Tax=Entamoeba invadens RepID=S0B2F2_ENTIV
rifcsplowo2_01_scaffold_15942_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(10992..12257)
-----------------
DNA (1266bp)
protein (422aa)
hypothetical protein
Uncharacterized protein id=2130042 bin=GWD2_RBX1-related_39_127 species=Cecembia lonarensis genus=Cecembia taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
rifcsplowo2_01_scaffold_15942_17
unknown

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12521..13315
-----------------
DNA (795bp)
protein (265aa)

This feature has no annotations

rifcsplowo2_01_scaffold_15942_18
CG_CPR04_01, CG_CPR04, Bacteria

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comp(13312..13614)
-----------------
DNA (303bp)
protein (101aa)
Aromatic amino acid permease id=2934049 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Displaying 18 items

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