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rifcsplowo2_01_scaffold_9351

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_9351_1
unknown

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3..95
-----------------
DNA (93bp)
protein (31aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9351_2
unknown

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comp(115..672)
-----------------
DNA (558bp)
protein (186aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9351_3
unknown

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942..1139
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9351_4
CG_Pacearch_04, Pacearchaeota, Archaea

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1306..1530
-----------------
DNA (225bp)
protein (75aa)
Tax=CG_Pacearch_04
rifcsplowo2_01_scaffold_9351_5
CG_Pacearch_04, Pacearchaeota, Archaea

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1521..1874
-----------------
DNA (354bp)
protein (118aa)
transcriptional modulator of MazE/toxin MazF; K07171 mRNA interferase [EC:3.1.-.-] Tax=CG_Pacearch_04
Stable plasmid inheritance protein PemK id=4759186 bin=PER_GWC2_41_7 species=Peptoniphilus indolicus genus=Peptoniphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
transcriptional modulator of MazE/toxin MazF
rifcsplowo2_01_scaffold_9351_6
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

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comp(1883..2452)
-----------------
DNA (570bp)
protein (190aa)
rubrerythrin Tax=RBG_13_WOR-2_44_8b_curated
rubrerythrin
rubrerythrin id=1242329 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
rifcsplowo2_01_scaffold_9351_7

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comp(2454..3005)
-----------------
DNA (552bp)
protein (184aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000369FE5C
Uncharacterized protein {ECO:0000313|EMBL:KHO49135.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rifcsplowo2_01_scaffold_9351_8
unknown

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comp(3129..3962)
-----------------
DNA (834bp)
protein (278aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9351_9
GWA2_Planctomycetes_40_7_curated, Planctomycetes, Bacteria

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comp(3959..5206)
-----------------
DNA (1248bp)
protein (416aa)
Hypothetical secreted protein, NosD and DUF11 family id=3297565 bin=GWA2_Planctomycetia_40_7 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
Hypothetical secreted protein, NosD and DUF11 family Tax=GWA2_Planctomycetes_40_7_curated
rifcsplowo2_01_scaffold_9351_10
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(5345..6961)
-----------------
DNA (1617bp)
protein (539aa)
GroL; HSP60 family chaperonin Tax=CG_Woesearch_02
Thermosome, chaperonin Cpn60/TCP-1 id=5800689 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Thermosome, chaperonin Cpn60/TCP-1
rifcsplowo2_01_scaffold_9351_11
CG_Pacearch_03, Pacearchaeota, Archaea

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comp(7031..8128)
-----------------
DNA (1098bp)
protein (366aa)
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=CG_Pacearch_03
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036DB9B1
tryptophanyl-tRNA synthetase
rifcsplowo2_01_scaffold_9351_12

Not on your lists

comp(8146..8535)
-----------------
DNA (390bp)
protein (130aa)
hypothetical protein; K09152 hypothetical protein id=5050958 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO53236.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
rifcsplowo2_01_scaffold_9351_13
AR18, Woesearchaeaota, DPANN, Archaea

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comp(8587..8829)
-----------------
DNA (243bp)
protein (81aa)
hypothetical protein; K09721 hypothetical protein id=5050959 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein; K09721 hypothetical protein Tax=AR18
hypothetical protein
rifcsplowo2_01_scaffold_9351_14

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comp(8832..9146)
-----------------
DNA (315bp)
protein (105aa)
erpK protein; K04798 prefoldin beta subunit id=5050960 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
Prefoldin subunit beta
rifcsplowo2_01_scaffold_9351_15

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comp(9143..9280)
-----------------
DNA (138bp)
protein (46aa)
Marine sediment metagenome DNA, contig: S01H1_S17826 {ECO:0000313|EMBL:GAG16421.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
RNA polymerase Rbp10 id=5799817 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_9351_16
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

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comp(9281..9511)
-----------------
DNA (231bp)
protein (77aa)
50S ribosomal protein L37Ae n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RL37A_METKA
rpl37ae; 50S ribosomal protein L37
50S ribosomal protein L37Ae {ECO:0000255|HAMAP-Rule:MF_00327}; Ribosomal protein L43e {ECO:0000255|HAMAP-Rule:MF_00327}; TaxID=190192 species="Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Meth
rifcsplowo2_01_scaffold_9351_17

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comp(9693..10145)
-----------------
DNA (453bp)
protein (151aa)
AsnC family transcriptional regulator id=5045866 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
AsnC family transcriptional regulator {ECO:0000313|EMBL:KHO46479.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
AsnC family transcriptional regulator
rifcsplowo2_01_scaffold_9351_18

Not on your lists

10251..11168
-----------------
DNA (918bp)
protein (306aa)
phosphate uptake regulator id=5045865 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphate uptake regulator {ECO:0000313|EMBL:KHO46478.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_9351_19
unknown

Not on your lists

comp(11139..13061)
-----------------
DNA (1923bp)
protein (641aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9351_20
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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13219..14634
-----------------
DNA (1416bp)
protein (472aa)
PHP domain protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D244_METSW
PHP domain-containing protein
PHP domain protein {ECO:0000313|EMBL:AEG17910.1}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium p
rifcsplowo2_01_scaffold_9351_21
unknown

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14703..15404
-----------------
DNA (702bp)
protein (234aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9351_22
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

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15659..16144
-----------------
DNA (486bp)
protein (162aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03660 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
Similar to 8-oxoguanine glycosylase (Hogg1) id=4795187 bin=GWC2_Planctomycete_KSU_39_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
putative 8-oxoguanine DNA glycosylase
rifcsplowo2_01_scaffold_9351_23
unknown

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comp(16102..16767)
-----------------
DNA (666bp)
protein (222aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9351_24
AR18, Woesearchaeaota, DPANN, Archaea

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16820..18784
-----------------
DNA (1965bp)
protein (655aa)
AP endonuclease family enzyme
id=5047314 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR18
rifcsplowo2_01_scaffold_9351_25
AR18, Woesearchaeaota, DPANN, Archaea

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18817..19650
-----------------
DNA (834bp)
protein (278aa)
DNA polymerase beta domain protein region id=5047318 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA polymerase beta domain protein region Tax=AR18
DNA polymerase beta protein
rifcsplowo2_01_scaffold_9351_26
unknown

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comp(19637..20425)
-----------------
DNA (789bp)
protein (263aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9351_27

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comp(20496..21767)
-----------------
DNA (1272bp)
protein (424aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] id=5050387 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Pyruvate, water dikinase {ECO:0000313|EMBL:KHO53434.1}; EC=2.7.9.2 {ECO:0000313|EMBL:KHO53434.1};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
phosphoenolpyruvate synthase
Displaying 27 items

View Taxonomy