ggKbase home page

rifcsplowo2_01_scaffold_960

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_960_1
unknown

Not on your lists

comp(192..398)
DNA (207bp) protein (69aa)

This feature has no annotations

rifcsplowo2_01_scaffold_960_2
GWA1_OD1_36_12, Parcubacteria, Bacteria

Not on your lists

comp(434..1114)
DNA (681bp) protein (227aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP92467.1}; TaxID=1618782 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_36_12.;"
id=5048684 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_960_3

Not on your lists


1216..2745
DNA (1530bp) protein (510aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00282};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}
Phenylalanine--tRNA ligase alpha subunit id=5800822 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Phenylalanine-tRNA ligase alpha subunit
rifcsplowo2_01_scaffold_960_4

Not on your lists


2747..4396
DNA (1650bp) protein (550aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00284};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284};
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPR9_THELI id=5103639 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Phenylalanine-tRNA ligase beta subunit
rifcsplowo2_01_scaffold_960_5

Not on your lists


comp(4408..4770)
DNA (363bp) protein (121aa)
Large subunit ribosomal protein L14e {ECO:0000313|EMBL:KHO51240.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L14; K02875 large subunit ribosomal protein L14e id=5042328 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14e
rifcsplowo2_01_scaffold_960_6
unknown

Not on your lists

comp(4865..5149)
DNA (285bp) protein (95aa)
50S ribosomal protein L34e n=2 Tax=Methanobacterium RepID=K6TYY7_9EURY Tax=AR20
50S ribosomal protein L34e n=2 Tax=Methanobacterium RepID=K6TYY7_9EURY id=5103277 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L34e
rifcsplowo2_01_scaffold_960_7

Not on your lists

5405..5890
DNA (486bp) protein (162aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51238.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
seg id=5043684 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_960_8

Not on your lists

comp(5887..6633)
DNA (747bp) protein (249aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO51237.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_960_9
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(6634..8049)
DNA (1416bp) protein (472aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=AR11
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_960_10

Not on your lists


comp(8106..8561)
DNA (456bp) protein (152aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
rifcsplowo2_01_scaffold_960_11
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists


comp(8562..9002)
DNA (441bp) protein (147aa)
rpl30p; 50S ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=CG_Woesearch_01
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30P
rifcsplowo2_01_scaffold_960_12
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(9005..9823)
DNA (819bp) protein (273aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=CG_Woesearch_02
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5041779 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5
rifcsplowo2_01_scaffold_960_13

Not on your lists


comp(9826..10401)
DNA (576bp) protein (192aa)
50S ribosomal protein L18P n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL18_NANEQ
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18P
rifcsplowo2_01_scaffold_960_14

Not on your lists

comp(10398..10847)
DNA (450bp) protein (150aa)
50S ribosomal protein L19e n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RE48_ARCPA
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
50S ribosomal protein L19e
rifcsplowo2_01_scaffold_960_15

Not on your lists

comp(10852..11421)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037197A6
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO46816.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L32e
rifcsplowo2_01_scaffold_960_16

Not on your lists


comp(11418..12038)
DNA (621bp) protein (207aa)
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12005.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6 id=5800047 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L6
rifcsplowo2_01_scaffold_960_17

Not on your lists


comp(11989..12378)
DNA (390bp) protein (130aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rps8p; 30S ribosomal protein S8
rifcsplowo2_01_scaffold_960_18
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(12388..12618)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003729D23
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=RBG_13_Woesearchaeota_36_6_curated
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_960_19

Not on your lists


comp(12615..13169)
DNA (555bp) protein (185aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsplowo2_01_scaffold_960_20
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(13132..13827)
DNA (696bp) protein (232aa)
30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e Tax=CG_Woesearch_02
30S ribosomal protein S4E; K02987 small subunit ribosomal protein S4e id=5042313 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S4
rifcsplowo2_01_scaffold_960_21

Not on your lists


comp(13833..14228)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl24p; 50S ribosomal protein L24
rifcsplowo2_01_scaffold_960_22

Not on your lists


comp(14237..14638)
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_960_23

Not on your lists


comp(14640..15059)
DNA (420bp) protein (140aa)
30S ribosomal protein S17P n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12010.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps17p; 30S ribosomal protein S17
rifcsplowo2_01_scaffold_960_24
Candidatus Methanomethylophilus alvus, Candidatus Methanomethylophilus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(15065..15295)
DNA (231bp) protein (77aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
rnp1; ribonuclease P protein component 1 (EC:3.1.26.5)
Uncharacterized protein n=2 Tax=Euryarchaeota RepID=U5Q284_9EURY
rifcsplowo2_01_scaffold_960_25
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(15305..15613)
DNA (309bp) protein (103aa)
translation initiation factor 1 (eif-1/sui1); K03113 translation initiation factor 1 Tax=RBG_13_Woesearchaeota_36_6_curated
translation initiation factor 1 (eIF-1/SUI1); K03113 translation initiation factor 1 id=5042308 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
translation initiation factor 1 (eif-1/sui1)
rifcsplowo2_01_scaffold_960_26

Not on your lists


comp(15606..15857)
DNA (252bp) protein (84aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 id=5042307 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
rifcsplowo2_01_scaffold_960_27

Not on your lists


comp(15854..16576)
DNA (723bp) protein (241aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQK3_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
rifcsplowo2_01_scaffold_960_28

Not on your lists


comp(16573..17037)
DNA (465bp) protein (155aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22P
rifcsplowo2_01_scaffold_960_29

Not on your lists


comp(17038..17421)
DNA (384bp) protein (128aa)
30S ribosomal protein S19 n=2 Tax=Pyrococcus RepID=RS19_PYRAB
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19P
rifcsplowo2_01_scaffold_960_30

Not on your lists


comp(17427..18143)
DNA (717bp) protein (239aa)
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 id=5042303 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L2
Displaying items 1-30 of 63 in total

View Taxonomy