ggKbase home page

rifcsplowo2_01_scaffold_2902

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_2902_1
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

93..542
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein
id=5800786 Tax=CG_Pacearch_03
id=5800786 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_2902_2
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(655..1581)
-----------------
DNA (927bp)
protein (309aa)
RelA/SpoT domain-containing protein id=5044086 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
RelA/SpoT domain-containing protein Tax=AR18
RelA/SpoT domain-containing protein
rifcsplowo2_01_scaffold_2902_3
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists


1822..2439
-----------------
DNA (618bp)
protein (206aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035E9331
50S ribosomal protein L1 Tax=CG_Pacearch_02
50S ribosomal protein L1
rifcsplowo2_01_scaffold_2902_4
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists


2441..3241
-----------------
DNA (801bp)
protein (267aa)
50S ribosomal protein L10 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D3L7_METSW
Acidic ribosomal protein P0-like protein; K02864 large subunit ribosomal protein L10 Tax=CG_Pacearch_02
acidic ribosomal protein P0-like protein
rifcsplowo2_01_scaffold_2902_5
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

3241..3516
-----------------
DNA (276bp)
protein (92aa)
50S ribosomal protein L12 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=Q74MP7_NANEQ
rpl12p; 50S ribosomal protein L12P; K02869 large subunit ribosomal protein L12 Tax=CG_Pacearch_06
rpl12p; 50S ribosomal protein L12P
rifcsplowo2_01_scaffold_2902_6
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(3552..4304)
-----------------
DNA (753bp)
protein (251aa)
id=4367362 Tax=CG_Pacearch_03
id=4367362 bin=PER_GWC2_41_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsplowo2_01_scaffold_2902_7
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

4865..5377
-----------------
DNA (513bp)
protein (171aa)
ADP-ribose pyrophosphatase Tax=CG_Woesearch_01
hypothetical protein
Putative MutT/nudix family protein id=1263860 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
rifcsplowo2_01_scaffold_2902_8
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

comp(5374..5652)
-----------------
DNA (279bp)
protein (93aa)
Tax=CG_Pacearch_04
rifcsplowo2_01_scaffold_2902_9
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(5729..7198)
-----------------
DNA (1470bp)
protein (490aa)
thymidine phosphorylase (EC:2.4.2.4); K00758 thymidine phosphorylase [EC:2.4.2.4] Tax=CG_Pacearch_03
AMP phosphohydrolase; K00758 thymidine phosphorylase [EC:2.4.2.4] id=5043588 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
amp phosphorylase (EC:2.4.2.-)
rifcsplowo2_01_scaffold_2902_10
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(7227..8261)
-----------------
DNA (1035bp)
protein (345aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036CCA3F
hypothetical protein Tax=CG_Pacearch_03
putative permease
rifcsplowo2_01_scaffold_2902_11
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

8381..9082
-----------------
DNA (702bp)
protein (234aa)
id=5048829 Tax=CG_Pacearch_03
id=5048829 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_01_scaffold_2902_12
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

9142..9483
-----------------
DNA (342bp)
protein (114aa)
Tax=RBG_16_Pacearchaeota_35_8_curated
rifcsplowo2_01_scaffold_2902_13
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(9526..9957)
-----------------
DNA (432bp)
protein (144aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_01_scaffold_2902_14
unknown

Not on your lists

comp(9964..10206)
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2902_15
unknown

Not on your lists

comp(10278..10700)
-----------------
DNA (423bp)
protein (141aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2902_16

Not on your lists


10919..11857
-----------------
DNA (939bp)
protein (313aa)
50S ribosomal protein L3 n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXT2_FERPA id=5103252 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L3P {ECO:0000313|EMBL:AJS12506.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3
rifcsplowo2_01_scaffold_2902_17

Not on your lists


11854..12621
-----------------
DNA (768bp)
protein (256aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosomal protein L4 {ECO:0000313|EMBL:AJS12505.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
rifcsplowo2_01_scaffold_2902_18
unknown

Not on your lists

12618..12740
-----------------
DNA (123bp)
protein (41aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2902_19
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


12742..12981
-----------------
DNA (240bp)
protein (80aa)
50S ribosomal protein L23P n=3 Tax=Thermococcus RepID=RL23_PYRKO id=5103254 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=CG_Pacearch_06
50S ribosomal protein L23P
rifcsplowo2_01_scaffold_2902_20

Not on your lists


12982..13683
-----------------
DNA (702bp)
protein (234aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS11673.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2 id=5800061 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L2
rifcsplowo2_01_scaffold_2902_21

Not on your lists


13683..14087
-----------------
DNA (405bp)
protein (135aa)
30S ribosomal protein S19P n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AFU9_PYRYC
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19P
rifcsplowo2_01_scaffold_2902_22

Not on your lists


14053..14637
-----------------
DNA (585bp)
protein (195aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22
rifcsplowo2_01_scaffold_2902_23

Not on your lists


14639..15322
-----------------
DNA (684bp)
protein (228aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQ98_9ZZZZ
30S ribosomal protein S3 {ECO:0000313|EMBL:AJS12501.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
rifcsplowo2_01_scaffold_2902_24
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

15322..15534
-----------------
DNA (213bp)
protein (71aa)
Tax=CG_Pacearch_06
rifcsplowo2_01_scaffold_2902_25
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

15538..15837
-----------------
DNA (300bp)
protein (100aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VQK7_9EURY
translation initiation factor Sui1; K03113 translation initiation factor 1 Tax=CG_Pacearch_02
translation initiation factor Sui1
rifcsplowo2_01_scaffold_2902_26

Not on your lists


15844..16161
-----------------
DNA (318bp)
protein (106aa)
30S ribosomal protein S17P n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KSU2_ARCVS
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17
rifcsplowo2_01_scaffold_2902_27

Not on your lists


16158..16559
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=5046849 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_2902_28

Not on your lists


16556..16984
-----------------
DNA (429bp)
protein (143aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
Ribosomal protein L24P
rifcsplowo2_01_scaffold_2902_29
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists


16965..17585
-----------------
DNA (621bp)
protein (207aa)
30S ribosomal protein S4; K02987 small subunit ribosomal protein S4e Tax=CG_Pacearch_03
rifcsplowo2_01_scaffold_2902_30

Not on your lists


17582..18094
-----------------
DNA (513bp)
protein (171aa)
50S ribosomal protein L5 n=1 Tax=Methanobacterium sp. MB1 RepID=U6EAL8_9EURY
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12497.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl5p; 50S ribosomal protein L5P
Displaying items 1-30 of 63 in total

View Taxonomy