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rifcsplowo2_01_scaffold_8147

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_8147_1
unknown

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comp(3..131)
-----------------
DNA (129bp)
protein (43aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8147_2
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(342..1616)
-----------------
DNA (1275bp)
protein (425aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RBG_13_Pacearchaeota_36_9_curated
Cysteine--tRNA ligase n=2 Tax=Dictyoglomus RepID=SYC_DICT6 id=5103307 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Cysteine-tRNA ligase
rifcsplowo2_01_scaffold_8147_3
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1659..1769)
-----------------
DNA (111bp)
protein (37aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HZ93_9SPHI
rifcsplowo2_01_scaffold_8147_4

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comp(1799..2293)
-----------------
DNA (495bp)
protein (165aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A9583
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62593.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_8147_5
unknown

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comp(2304..2819)
-----------------
DNA (516bp)
protein (172aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8147_6
GWB1_OP11_41_5, Daviesbacteria, Microgenomates, Bacteria

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comp(3460..4428)
-----------------
DNA (969bp)
protein (323aa)
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:KKS13607.1}; TaxID=1618429 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_41_5.;"
Phospholipase D/Transphosphatidylase id=5799976 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
phospholipase D/Transphosphatidylase
rifcsplowo2_01_scaffold_8147_7
unknown

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comp(4431..5519)
-----------------
DNA (1089bp)
protein (363aa)
DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Candidatus Parvarchaeum RepID=D2EGK9_9EURY id=5103234 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Candidatus Parvarchaeum RepID=D2EGK9_9EURY Tax=AR20
DNA topoisomerase ATP-hydrolyzing
rifcsplowo2_01_scaffold_8147_8

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comp(5500..7077)
-----------------
DNA (1578bp)
protein (526aa)
Type 2 DNA topoisomerase 6 subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00322};; Type II DNA topoisomerase VI subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; TaxID=
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] id=5048845 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA topoisomerase VI, subunit B
rifcsplowo2_01_scaffold_8147_9
unknown

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comp(7117..7623)
-----------------
DNA (507bp)
protein (169aa)
ASCG--KH--type--1--domain--protein
Putative RNA-processing protein n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZRF4_THELI id=5103232 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative RNA-processing protein n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZRF4_THELI Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_8147_10

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comp(7625..7936)
-----------------
DNA (312bp)
protein (104aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363D148
Translation initiation factor 1A
Translation initiation factor 1A {ECO:0000256|HAMAP-Rule:MF_00216}; Short=aIF-1A {ECO:0000256|HAMAP-Rule:MF_00216};; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_8147_11
unknown

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comp(7960..8271)
-----------------
DNA (312bp)
protein (104aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJD2_PYRSN id=5103229 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJD2_PYRSN Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_8147_12
unknown

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comp(8268..8555)
-----------------
DNA (288bp)
protein (96aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8A2_METEZ id=5103228 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8A2_METEZ Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_8147_13
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

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comp(8552..8959)
-----------------
DNA (408bp)
protein (136aa)
Translation initiation factor 2 subunit beta n=2 Tax=Methanothermobacter RepID=IF2B_METTH id=5103227 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
eif2b; translation initiation factor 2 subunit beta (aeIF-2b); K03238 translation initiation factor 2 subunit 2 Tax=RBG_13_Pacearchaeota_33_26_curated
Translation initiation factor 2 subunit beta
rifcsplowo2_01_scaffold_8147_14
unknown

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comp(8956..9591)
-----------------
DNA (636bp)
protein (212aa)
Uncharacterized protein conserved in archaea n=2 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QHY8_9EURY id=5103225 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein conserved in archaea n=2 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QHY8_9EURY Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_8147_15
unknown

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comp(9861..11876)
-----------------
DNA (2016bp)
protein (672aa)
DNA replication initiator (Cdc21/Cdc54) n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AET4_9EURY id=5103224 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA replication initiator (Cdc21/Cdc54) n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AET4_9EURY Tax=AR20
DNA replication initiator Cdc21/Cdc54
rifcsplowo2_01_scaffold_8147_16
AR17, Woesearchaeaota, DPANN, Archaea

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comp(11878..12429)
-----------------
DNA (552bp)
protein (184aa)
TATA-box-binding protein n=1 Tax=Candidatus Nanosalinarum sp. J07AB56 RepID=G0QBY9_9EURY id=5103223 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
TATA-box-binding protein
tbp-1; TATA-box-binding protein; K03120 transcription initiation factor TFIID TATA-box-binding protein Tax=AR17
rifcsplowo2_01_scaffold_8147_17

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comp(12514..15342)
-----------------
DNA (2829bp)
protein (943aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] id=5043974 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Isoleucyl-tRNA synthetase {ECO:0000313|EMBL:KHO46964.1}; EC=6.1.1.5 {ECO:0000313|EMBL:KHO46964.1};; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
isoleucyl-tRNA synthetase
rifcsplowo2_01_scaffold_8147_18
unknown

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comp(15521..16240)
-----------------
DNA (720bp)
protein (240aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8147_19
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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16385..17374
-----------------
DNA (990bp)
protein (330aa)
Transcriptional regulator n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TC38_9EURY
Lrp/AsnC family transcription regulator Tax=RBG_13_Pacearchaeota_36_9_curated
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
rifcsplowo2_01_scaffold_8147_20
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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17430..17744
-----------------
DNA (315bp)
protein (105aa)
Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsplowo2_01_scaffold_8147_21
Methanococcus aeolicus, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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17799..20276
-----------------
DNA (2478bp)
protein (826aa)
Replication factor C n=1 Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=A6UWL6_META3
replication factor C small subunit
Replication factor C {ECO:0000313|EMBL:ABR56888.1}; TaxID=419665 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus aeolicus (stra
Displaying 21 items

View Taxonomy