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rifcsplowo2_01_scaffold_3395

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_3395_1

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comp(3..1904)
-----------------
DNA (1902bp)
protein (634aa)
Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O29080_ARCFU id=5103280 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62561.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_3395_2
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(1935..2333)
-----------------
DNA (399bp)
protein (133aa)
Prefoldin subunit alpha n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=PFDA_METKA id=5103279 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
putative prefoldin, molecular chaperone implicated in de novo protein folding
Prefoldin subunit alpha {ECO:0000256|HAMAP-Rule:MF_00308}; GimC subunit alpha {ECO:0000256|HAMAP-Rule:MF_00308}; TaxID=195522 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcac
rifcsplowo2_01_scaffold_3395_3

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comp(2305..2619)
-----------------
DNA (315bp)
protein (105aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003685530
50S ribosomal protein L14e
50S ribosomal protein L14e {ECO:0000313|EMBL:AJF62559.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_3395_4
Methanocaldococcus villosus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(2616..2879)
-----------------
DNA (264bp)
protein (88aa)
50S ribosomal protein L34e n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6V029_9EURY
50S ribosomal protein L34e {ECO:0000256|HAMAP-Rule:MF_00349}; TaxID=1069083 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methano
rpl34e; 50S ribosomal protein L34e
rifcsplowo2_01_scaffold_3395_5

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comp(2894..3328)
-----------------
DNA (435bp)
protein (145aa)
Putative uncharacterized protein n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VRS7_METIM id=5103276 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62557.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_3395_6
unknown

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comp(3330..4712)
-----------------
DNA (1383bp)
protein (461aa)
Protein translocase subunit SecY n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB98_METSL id=5103275 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Protein translocase subunit SecY n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB98_METSL Tax=AR20
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_3395_7

Not on your lists


comp(4687..5145)
-----------------
DNA (459bp)
protein (153aa)
50S ribosomal protein L15P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZE1_METFV id=5103274 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L15P
rifcsplowo2_01_scaffold_3395_8

Not on your lists


comp(5147..5617)
-----------------
DNA (471bp)
protein (157aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003719CE9
50S ribosomal protein L30P
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_3395_9
unknown

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comp(5614..6366)
-----------------
DNA (753bp)
protein (251aa)
30S ribosomal protein S5 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS5_NANEQ id=5103272 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S5 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS5_NANEQ Tax=AR20
30S ribosomal protein S5
rifcsplowo2_01_scaffold_3395_10

Not on your lists


comp(6359..6853)
-----------------
DNA (495bp)
protein (165aa)
50S ribosomal protein L18P n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AM76_METOI
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
rifcsplowo2_01_scaffold_3395_11

Not on your lists

comp(6843..7298)
-----------------
DNA (456bp)
protein (152aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000381F97D
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L19e
rifcsplowo2_01_scaffold_3395_12
unknown

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comp(7300..7809)
-----------------
DNA (510bp)
protein (170aa)
50S ribosomal protein L32e n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VQL6_9EURY id=5103269 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L32e n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VQL6_9EURY Tax=AR20
50S ribosomal protein L32e
rifcsplowo2_01_scaffold_3395_13

Not on your lists


comp(7785..8318)
-----------------
DNA (534bp)
protein (178aa)
50S ribosomal protein L6 n=5 Tax=Thermococcus RepID=RL6_PYRKO id=5103268 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12582.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
rifcsplowo2_01_scaffold_3395_14

Not on your lists


comp(8321..8713)
-----------------
DNA (393bp)
protein (131aa)
30S ribosomal protein S8 {ECO:0000313|EMBL:AJS12583.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
rifcsplowo2_01_scaffold_3395_15

Not on your lists

comp(8715..8945)
-----------------
DNA (231bp)
protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46813.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_3395_16

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comp(8942..9463)
-----------------
DNA (522bp)
protein (174aa)
50S ribosomal protein L5 n=2 Tax=Methanotorris RepID=F6BD87_METIK id=5103265 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12584.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5
rifcsplowo2_01_scaffold_3395_17
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(9456..10139)
-----------------
DNA (684bp)
protein (228aa)
30S ribosomal protein S4e n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AFV7_PYRYC
30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e Tax=CG_Woesearch_02
30S ribosomal protein S4e
rifcsplowo2_01_scaffold_3395_18

Not on your lists


comp(10132..10518)
-----------------
DNA (387bp)
protein (129aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24P
rifcsplowo2_01_scaffold_3395_19

Not on your lists


comp(10520..10921)
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14P n=2 Tax=Methanotorris RepID=F6BD90_METIK id=5103262 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_3395_20

Not on your lists


comp(10918..11181)
-----------------
DNA (264bp)
protein (88aa)
30S ribosomal protein S17P n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY id=5103261 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P
rifcsplowo2_01_scaffold_3395_21
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(11171..11359)
-----------------
DNA (189bp)
protein (63aa)
hypothetical protein Tax=CG_Pacearch_04
rifcsplowo2_01_scaffold_3395_22
Methanocaldococcus jannaschii, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(11356..11661)
-----------------
DNA (306bp)
protein (102aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=SUI1_METJA
translation initiation factor Sui1
Protein translation factor SUI1 homolog {ECO:0000255|HAMAP-Rule:MF_00604}; TaxID=243232 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" sou
rifcsplowo2_01_scaffold_3395_23

Not on your lists


comp(11654..11866)
-----------------
DNA (213bp)
protein (71aa)
50S ribosomal protein L29P n=2 Tax=Methanotorris RepID=F6BD94_METIK id=5103259 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L29P
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_3395_24

Not on your lists


comp(11829..12530)
-----------------
DNA (702bp)
protein (234aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GT05_9ZZZZ rbh
30S ribosomal protein S3 {ECO:0000313|EMBL:AGT99796.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
30S ribosomal protein S3
rifcsplowo2_01_scaffold_3395_25

Not on your lists


comp(12527..12925)
-----------------
DNA (399bp)
protein (133aa)
50S ribosomal protein L22P n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL22_NANEQ id=5103257 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22P
rifcsplowo2_01_scaffold_3395_26

Not on your lists


comp(12927..13319)
-----------------
DNA (393bp)
protein (131aa)
30S ribosomal protein S19 n=7 Tax=Pyrococcus RepID=RS19_PYRAB id=5103256 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19
rifcsplowo2_01_scaffold_3395_27

Not on your lists


comp(13321..14031)
-----------------
DNA (711bp)
protein (237aa)
50S ribosomal protein L2 n=1 Tax=Methanococcoides burtonii (strain DSM 6242) RepID=RL2_METBU id=5103255 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS12591.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2
rifcsplowo2_01_scaffold_3395_28

Not on your lists


comp(14033..14293)
-----------------
DNA (261bp)
protein (87aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
Large subunit ribosomal protein L23 {ECO:0000313|EMBL:KHO52369.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
50S ribosomal protein L23P
rifcsplowo2_01_scaffold_3395_29

Not on your lists


comp(14290..15093)
-----------------
DNA (804bp)
protein (268aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosomal protein L4 {ECO:0000313|EMBL:AJS12592.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
rifcsplowo2_01_scaffold_3395_30

Not on your lists


comp(15090..16001)
-----------------
DNA (912bp)
protein (304aa)
ASCG--Ribosomal--protein--L3
50S ribosomal protein L3 n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXT2_FERPA id=5103252 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3
Displaying items 1-30 of 41 in total

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