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rifcsplowo2_01_scaffold_6716

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_6716_1
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

59..355
-----------------
DNA (297bp)
protein (99aa)
DNA polymerase beta domain-containing protein; K07075 Tax=CG_Pacearch_05
Putative nucleotidyltransferase id=4157146 bin=GWC2_Deltaproteobacteria_42_51 species=Methanobacterium sp. Maddingley MBC34 genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
DNA polymerase beta domain-containing protein
rifcsplowo2_01_scaffold_6716_2
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

352..720
-----------------
DNA (369bp)
protein (123aa)
hypothetical protein Tax=CG_Pacearch_05
Putative uncharacterized protein id=2163186 bin=GWB2_Proteobacteria_55_19 species=Thermosipho melanesiensis genus=Thermosipho taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
rifcsplowo2_01_scaffold_6716_3

Not on your lists

comp(911..1366)
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein n=3 Tax=Microcystis aeruginosa RepID=L8NL84_MICAE id=5103834 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF63112.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_6716_4
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(1368..1577)
-----------------
DNA (210bp)
protein (70aa)
Succinyl-CoA synthetase (Alpha subunit) n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5ICE1_ACIB4 id=5103835 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Succinyl-CoA synthetase (Alpha subunit) Tax=RBG_13_Pacearchaeota_36_9_curated
Succinyl-CoA synthetase Alpha subunit
rifcsplowo2_01_scaffold_6716_5

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comp(1617..2063)
-----------------
DNA (447bp)
protein (149aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L27; K02876 large subunit ribosomal protein L15 id=5046862 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L15P
rifcsplowo2_01_scaffold_6716_6
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists


comp(2060..2476)
-----------------
DNA (417bp)
protein (139aa)
50S ribosomal protein L30P n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXV3_FERPA
ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=CG_Pacearch_03
LSU ribosomal protein L7e (L30p)
rifcsplowo2_01_scaffold_6716_7
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists


comp(2473..3252)
-----------------
DNA (780bp)
protein (260aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=CG_Pacearch_02
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5042321 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
rifcsplowo2_01_scaffold_6716_8

Not on your lists


comp(3227..3739)
-----------------
DNA (513bp)
protein (171aa)
50S ribosomal protein L18P n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HME9_ACIS0
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ribosomal protein L18
rifcsplowo2_01_scaffold_6716_9
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(3736..4149)
-----------------
DNA (414bp)
protein (138aa)
50S ribosomal protein L19e n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0INE6_NITGG
rpl19e; 50S ribosomal protein L19e; K02885 large subunit ribosomal protein L19e Tax=CG_Pacearch_03
rpl19e; 50S ribosomal protein L19e
rifcsplowo2_01_scaffold_6716_10
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(4146..4499)
-----------------
DNA (354bp)
protein (118aa)
Ribosomal protein L32e Rpl32e n=1 Tax=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) RepID=D3E2F9_METRM
50S ribosomal protein L32e; K02912 large subunit ribosomal protein L32e Tax=CG_Pacearch_03
ribosomal protein L32e Rpl32e
rifcsplowo2_01_scaffold_6716_11

Not on your lists


comp(4499..5041)
-----------------
DNA (543bp)
protein (181aa)
50S ribosomal protein L6 n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=RL6_PYRAB
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS11965.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl6p; 50S ribosomal protein L6
rifcsplowo2_01_scaffold_6716_12
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists


comp(5044..5472)
-----------------
DNA (429bp)
protein (143aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=CG_Pacearch_02
rps8p; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=24626622 bin=Haloquadratum_J07HQX50 species=Haloquadratum sp. J07HQX50 genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_J07HQX50
30S ribosomal protein S8
rifcsplowo2_01_scaffold_6716_13
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


comp(5657..6184)
-----------------
DNA (528bp)
protein (176aa)
50S ribosomal protein L5 n=1 Tax=Methanobacterium sp. MB1 RepID=U6EAL8_9EURY
rpl5p; ribosomal protein L5P Rpl5p; K02931 large subunit ribosomal protein L5 Tax=CG_Pacearch_06
rpl5p; 50S ribosomal protein L5P
rifcsplowo2_01_scaffold_6716_14
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists


comp(6181..6798)
-----------------
DNA (618bp)
protein (206aa)
30S ribosomal protein S4; K02987 small subunit ribosomal protein S4e Tax=CG_Pacearch_03
rifcsplowo2_01_scaffold_6716_15

Not on your lists


comp(6779..7192)
-----------------
DNA (414bp)
protein (138aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=5042312 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl24p; 50S ribosomal protein L24
rifcsplowo2_01_scaffold_6716_16
unknown

Not on your lists

comp(7189..7530)
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6716_17

Not on your lists


comp(7527..7928)
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14P id=5800053 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_6716_18

Not on your lists


comp(7925..8197)
-----------------
DNA (273bp)
protein (91aa)
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P id=5800054 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S17
rifcsplowo2_01_scaffold_6716_19
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(8278..8577)
-----------------
DNA (300bp)
protein (100aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VQK7_9EURY
translation initiation factor Sui1; K03113 translation initiation factor 1 Tax=CG_Pacearch_06
translation initiation factor Sui1
rifcsplowo2_01_scaffold_6716_20
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(8581..8769)
-----------------
DNA (189bp)
protein (63aa)
Tax=CG_Pacearch_02
rifcsplowo2_01_scaffold_6716_21

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comp(8787..9485)
-----------------
DNA (699bp)
protein (233aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GW82_9ZZZZ rbh
30S ribosomal protein S3 {ECO:0000313|EMBL:AGT99815.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
rps3p; 30S ribosomal protein S3P
rifcsplowo2_01_scaffold_6716_22

Not on your lists


comp(9478..9987)
-----------------
DNA (510bp)
protein (170aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22
rifcsplowo2_01_scaffold_6716_23

Not on your lists


comp(10043..10447)
-----------------
DNA (405bp)
protein (135aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036287C9
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
SSU ribosomal protein S19P
rifcsplowo2_01_scaffold_6716_24

Not on your lists


comp(10444..11136)
-----------------
DNA (693bp)
protein (231aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS11741.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2 id=5800061 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Ribosomal protein L2
rifcsplowo2_01_scaffold_6716_25
unknown

Not on your lists

comp(11138..11497)
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6716_26
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


comp(11499..11741)
-----------------
DNA (243bp)
protein (81aa)
50S ribosomal protein L23P n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=RL23_STAMF
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=CG_Pacearch_06
50S ribosomal protein L23
rifcsplowo2_01_scaffold_6716_27

Not on your lists


comp(11738..12502)
-----------------
DNA (765bp)
protein (255aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosomal protein L4 {ECO:0000313|EMBL:AJS11740.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
rifcsplowo2_01_scaffold_6716_28

Not on your lists


comp(12499..13320)
-----------------
DNA (822bp)
protein (274aa)
50S ribosomal protein L3 n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXT2_FERPA id=5103252 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L3P {ECO:0000313|EMBL:AJS11739.1}; Flags: Fragment;; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3
rifcsplowo2_01_scaffold_6716_29
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(13581..14282)
-----------------
DNA (702bp)
protein (234aa)
id=5048829 Tax=CG_Pacearch_02
id=5048829 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_01_scaffold_6716_30
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

14369..15400
-----------------
DNA (1032bp)
protein (344aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036CCA3F
hypothetical protein Tax=CG_Pacearch_03
hypothetical protein
Displaying items 1-30 of 32 in total

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