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rifcsplowo2_01_scaffold_4947

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_4947_1

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comp(109..1599)
-----------------
DNA (1491bp)
protein (497aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55791.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsplowo2_01_scaffold_4947_2

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1653..3761
-----------------
DNA (2109bp)
protein (703aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55790.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsplowo2_01_scaffold_4947_3

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3817..5994
-----------------
DNA (2178bp)
protein (726aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55790.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsplowo2_01_scaffold_4947_4
unknown

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6057..6671
-----------------
DNA (615bp)
protein (205aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4947_5

Not on your lists

comp(6681..7979)
-----------------
DNA (1299bp)
protein (433aa)
hypothetical protein
hypothetical protein; K06915 id=5240661 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF59654.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsplowo2_01_scaffold_4947_6
RIFOXYC2_FULL_RIF_OD1_09_47_9_curated, RIF-OD1-9, Parcubacteria, Bacteria

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comp(8019..8675)
-----------------
DNA (657bp)
protein (219aa)
id=4575941 Tax=RIFOXYC2_FULL_RIF_OD1_09_47_9_curated
id=4575941 bin=GWC2_Planctomycete_KSU_39_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
rifcsplowo2_01_scaffold_4947_7
unknown

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8729..9193
-----------------
DNA (465bp)
protein (155aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4947_8
AR10, Diapherotrites, DPANN, Archaea

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comp(9397..9876)
-----------------
DNA (480bp)
protein (160aa)
hypothetical protein
Putative uncharacterized protein id=5240662 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Putative uncharacterized protein Tax=AR10
rifcsplowo2_01_scaffold_4947_9
AR10, Diapherotrites, DPANN, Archaea

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comp(10090..10368)
-----------------
DNA (279bp)
protein (93aa)
albA; archaea-specific DNA-binding protein
albA; DNA/RNA-binding protein albA; K03622 archaea-specific DNA-binding protein id=5240666 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
albA; DNA/RNA-binding protein albA; K03622 archaea-specific DNA-binding protein Tax=AR10
rifcsplowo2_01_scaffold_4947_10
AR10, Diapherotrites, DPANN, Archaea

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comp(10712..11581)
-----------------
DNA (870bp)
protein (290aa)
hypothetical protein
transmembrane_regions id=5240667 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
transmembrane_regions Tax=AR10
rifcsplowo2_01_scaffold_4947_11
CG_Pacearch_04, Pacearchaeota, Archaea

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11722..12423
-----------------
DNA (702bp)
protein (234aa)
putative ATP binding protein Tax=CG_Pacearch_04
Putative ATP binding protein id=5799606 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein
rifcsplowo2_01_scaffold_4947_12
CG_Arma_01, Armatimonadetes, Bacteria

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12487..13866
-----------------
DNA (1380bp)
protein (460aa)
LysC; aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4] Tax=CG_Arma_01
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VRZ1_METIM
rifcsplowo2_01_scaffold_4947_13
BJP_IG2103_ACD39_50_23, ACD39, Bacteria

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13863..14954
-----------------
DNA (1092bp)
protein (364aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase id=3448622 bin=GWC2_ACD39_50_8 species=Parachlamydia acanthamoebae genus=Parachlamydia taxon_order=Chlamydiales taxon_class=Chlamydiia phylum=Chlamydiae tax=GWC2_ACD39_50_8 organism_group=ACD39
Tax=BJP_IG2103_ACD39_50_23
rifcsplowo2_01_scaffold_4947_14
unknown

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comp(15107..15340)
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4947_15
unknown

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comp(15370..15768)
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4947_16

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comp(15770..16555)
-----------------
DNA (786bp)
protein (262aa)
hypothetical protein
id=2898902 bin=PER_GWC2_41_7 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Uncharacterized protein {ECO:0000313|EMBL:AJF62773.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_4947_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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16669..17031
-----------------
DNA (363bp)
protein (121aa)
Transcriptional regulator, BlaI/MecI/CopY family n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AIS6_PYRYC
transcription regulator, penicillinase repressor family; K07737 putative transcriptional regulator Tax=RBG_13_Bathyarchaeota_38_9_curated
transcriptional regulator, BlaI/MecI/CopY family
rifcsplowo2_01_scaffold_4947_18
AR11, Woesearchaeaota, DPANN, Archaea

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17052..17768
-----------------
DNA (717bp)
protein (239aa)
Predicted peptidase (M48 family) n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W248_UNCMA
peptidase M48 Ste24p Tax=AR11
peptidase
rifcsplowo2_01_scaffold_4947_19
R_RIF_OD1_03_45_10, RIF-OD1-3, Parcubacteria, Bacteria

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17856..19013
-----------------
DNA (1158bp)
protein (386aa)
cytochrome c biogenesis transmembrane protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_03_45_10_curated
cytochrome c biogenesis transmembrane protein
cytochrome c biogenesis transmembrane protein id=5240647 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_4947_20
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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19032..19385
-----------------
DNA (354bp)
protein (118aa)
hypothetical protein
Putative uncharacterized protein id=2898907 bin=PER_GWC2_41_7 species=Legionella drancourtii genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsplowo2_01_scaffold_4947_21
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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19501..19923
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein
id=2898910 Tax=RBG_16_Micrarchaeota_49_10_curated
id=2898910 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsplowo2_01_scaffold_4947_22
R_RIF_OD1_03_45_10, RIF-OD1-3, Parcubacteria, Bacteria

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19920..20168
-----------------
DNA (249bp)
protein (83aa)
hypothetical protein
id=5103497 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_03_45_10_curated
transmembrane_regions id=5801793 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
rifcsplowo2_01_scaffold_4947_23

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20191..21063
-----------------
DNA (873bp)
protein (291aa)
hypothetical protein n=1 Tax=Candidatus Microgenomatus auricola SCGC AAA011-E14 RepID=UPI00037B5D08
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO54196.1}; Flags: Fragment;; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsplowo2_01_scaffold_4947_24

Not on your lists

21081..21524
-----------------
DNA (444bp)
protein (148aa)
Uncharacterized protein family UPF0066 n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SX29_CLOC7
Uncharacterized protein {ECO:0000313|EMBL:KHO54197.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
hypothetical protein
rifcsplowo2_01_scaffold_4947_25
AR19, Pacearchaeaota, DPANN, Archaea

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21549..22103
-----------------
DNA (555bp)
protein (185aa)
Zinc finger, C2H2 id=5800404 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR19
rifcsplowo2_01_scaffold_4947_26

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22225..22776
-----------------
DNA (552bp)
protein (184aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO54199.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsplowo2_01_scaffold_4947_27

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22793..23050
-----------------
DNA (258bp)
protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO54200.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsplowo2_01_scaffold_4947_28
unknown

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comp(22933..23238)
-----------------
DNA (306bp)
protein (102aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4947_29
R_RIF_OD1_03_45_10, RIF-OD1-3, Parcubacteria, Bacteria

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23276..25930
-----------------
DNA (2655bp)
protein (885aa)
heavy metal translocating P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_03_45_10_curated
Cu2+-exporting ATPase (EC:3.6.3.4)
Heavy-metal transporting P-type ATPase id=5800398 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_4947_30

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comp(26044..27009)
-----------------
DNA (966bp)
protein (322aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO54203.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
Displaying items 1-30 of 42 in total

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